View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19606_low_1 (Length: 593)
Name: NF19606_low_1
Description: NF19606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19606_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 16 - 580
Target Start/End: Original strand, 17882248 - 17882812
Alignment:
| Q |
16 |
atatgaggaaagcagtctacatgtccggagcagtagaaaacaattcttcaagttcacagggttggagcatcccatcctattgtataacaatgaagtcagt |
115 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17882248 |
atatgaggaaagcagtctacctgtctggagcagtagaaaacaattctttaagttcacagggttggagcatcccatcctattgtataacaatgaagtcagt |
17882347 |
T |
|
| Q |
116 |
tgagaaaatgtccaaaaatgattggggagcagcatggaaaagtgaaattattcagggtcattagcacagatgacatacaaaatcactgtcaagttcatca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17882348 |
tgagaaaatgtccaaaaatgattggggagcagcatgaaaaagtgaaattattcagggtcattagcacagatgacatacaaaatcactgtcaagttcatca |
17882447 |
T |
|
| Q |
216 |
aaaactgtcttcaagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaagttccatgttgtc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17882448 |
aaaactgtcttcaagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaagttccatgttgtc |
17882547 |
T |
|
| Q |
316 |
aactaattgaatacaaacaggtataacatactaagaacataaatcatgaggccacaattcatctcaaaagaaacacctgatcaggtgcacgtttcaaagg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17882548 |
aactaattgaatacaaacaggtataacatactaagaacataaatcatgaggtcacaattcatctcaaaagaaacacctgatcaggtgcacgtttcaaagg |
17882647 |
T |
|
| Q |
416 |
tggaattaaatcatcagcaagcttgatatcatcattatatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaaggaca |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17882648 |
tggaattaaatcatcagcaagcttgatatcatcattatatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaaggaca |
17882747 |
T |
|
| Q |
516 |
tgaagaaatagaaaccctgtcaaagtaagtcctcgttcattcacaccttcagacaattctttttg |
580 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17882748 |
tgaagaaatagaaaccctgtcaaagtaattcctcgttcattcacaccttcagacaattctttttg |
17882812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 127 - 578
Target Start/End: Original strand, 14774988 - 14775437
Alignment:
| Q |
127 |
ccaaaaatgattggggagcagcatggaaaagtgaaattattcagggtcattagcacagatgacatacaaaatcactgtcaagttcatcaaaaactgtctt |
226 |
Q |
| |
|
||||||||||||||| ||||||||| ||| ||||||||| ||||||||||| ||||| || || |||||||||| |||||| ||||||| | | ||| |
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| T |
14774988 |
ccaaaaatgattgggaagcagcatgaaaatgtgaaattagtcagggtcatttgcacaaataactcacaaaatcaccatcaagtccatcaaagattttctc |
14775087 |
T |
|
| Q |
227 |
caagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaagttccatgttgtcaactaattgaa |
326 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||| | | |||||||||||||| ||||| | | | ||||| ||| ||| |
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|
| T |
14775088 |
caagaaacaaattgcttcatttgttaactcaacactctgcagacattaaatccgatgagaatagaataagat--aagtttcttatactcaacaaat-gaa |
14775184 |
T |
|
| Q |
327 |
tacaaacaggtataacatactaagaacataaatca-tgaggccacaattcatctcaaaagaaacacctgatcaggtgcacgtttcaaaggtggaattaaa |
425 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| | | ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
14775185 |
tacaaacatgtataacatataaagaacataaaaaaataaggtcacaattcatctgaaaagaaacacctgatcaggtgcacgtttcaaaggtggaatcaaa |
14775284 |
T |
|
| Q |
426 |
tcatcagcaagcttgatatcatcattatatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaaggacatgaagaaata |
525 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| | ||| |||||||| ||| ||| | |||||| ||| |
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|
| T |
14775285 |
ttatcagcaagcttgatatcatcattatatccaaacttcctgagcacggtccatgttttctcacggggcattttttctaagaagagggcgtgaagagata |
14775384 |
T |
|
| Q |
526 |
gaaaccctgtcaaagtaagtcctcgttcattcacaccttcagacaattctttt |
578 |
Q |
| |
|
||| |||| ||||| |||||| || |||||||||||||||| ||||| |||| |
|
|
| T |
14775385 |
taaatcctgccaaagaaagtccccgctcattcacaccttcaggcaattttttt |
14775437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 189 - 571
Target Start/End: Original strand, 15049893 - 15050266
Alignment:
| Q |
189 |
catacaaaatcactgtcaagttcatcaaaaactgtcttcaagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaat |
288 |
Q |
| |
|
||||||||||||| |||| ||||||||| | ||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||| | || | |
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|
| T |
15049893 |
catacaaaatcaccatcaaattcatcaaatattgtctccaagaaatcaattgcttcatcagtcaattcaacactctggagacattaaatccaatgagagt |
15049992 |
T |
|
| Q |
289 |
agaataagatgcaagttccatgttgtcaactaattgaatacaaacaggtataacatactaagaacataaatcatgaggccacaattcatctcaaaagaaa |
388 |
Q |
| |
|
|| ||||| |||||||||||| || ||||||||||||||| |||||||||| ||||| |||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
15049993 |
agcataag-------ttccatgttgtcgacaaattgaatacaaacatgtataacatataaagaatataatacatgatgccacaatttatctcaaaagaaa |
15050085 |
T |
|
| Q |
389 |
cacctgatcaggtgcacgtttcaaaggtggaattaaatcatcagcaagcttgatatcatcattatatccaaacctcctgagcacagtccatgttgtctca |
488 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||| || |||||||||| |||| |
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| T |
15050086 |
gacctgatcaggtgc--gtttcaaaggtggaaataaatcatcagaaagcttgatatcataattatatccaaacttcctgagtacggtccatgttgcctca |
15050183 |
T |
|
| Q |
489 |
agaggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgttcattcacaccttcagacaa |
571 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||| ||||||| | |||||| |||||| ||||||||||||||||||||||||| |
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|
| T |
15050184 |
ggaggccccttttccatgaaaagggtatgaagatatagaaatcatgtcaaggtaagttctcgttcattcacaccttcagacaa |
15050266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 204 - 579
Target Start/End: Original strand, 15017135 - 15017506
Alignment:
| Q |
204 |
tcaagttcatcaaaaactgtcttcaagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaag |
303 |
Q |
| |
|
|||| ||||||||| | ||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||| |||| | |||||||||||| | || |
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|
| T |
15017135 |
tcaaattcatcaaagattgtctccaagaaatcaactgcttcatttgtcaattcaacactctgcatacattaaa-ccaatgagaatagaataagttccat- |
15017232 |
T |
|
| Q |
304 |
ttccatgttgtcaactaattgaa-tacaaacaggtataacatactaagaacataaatcatgaggccacaattcatctcaaaagaaacacctgatcaggtg |
402 |
Q |
| |
|
|| |||||||| ||||||| ||||||||||||||||||| ||||||||| || || ||||||||| ||||||||||||||||||||||||||| |
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|
| T |
15017233 |
----atattgtcaacaaattgaaatacaaacaggtataacatatagagaacataatacaagatgccacaatttatctcaaaagaaacacctgatcaggtg |
15017328 |
T |
|
| Q |
403 |
cacgtttcaaaggtggaattaaatcatcagcaagcttgatatcatcattatatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttc |
502 |
Q |
| |
|
|| | |||||||| |||| ||||||| |||||||||||| ||||| ||||||||||||| | | |||||||||||||||| |||||||||||||||||| |
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|
| T |
15017329 |
caagcttcaaaggcggaaataaatcagcagcaagcttgacatcataattatatccaaacttttttagcacagtccatgttgcctcaagaggccctttttc |
15017428 |
T |
|
| Q |
503 |
tatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgttcattcacaccttcagac-aattcttttt |
579 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
15017429 |
tatgaaaagggcatgaagaaatagaaatcctgttgaagtaagtcctcgttcattcacgccttctgacaaattcttttt |
15017506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 15049735 - 15049793
Alignment:
| Q |
26 |
agcagtctacatgtccggagcagtagaaaacaattcttcaagttcacagggttggagca |
84 |
Q |
| |
|
|||| ||||| | ||||||||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
15049735 |
agcaatctacctttccggagcagtagaaaacagttcttcaagttcacggggttgcagca |
15049793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 108 - 573
Target Start/End: Complemental strand, 36874788 - 36874309
Alignment:
| Q |
108 |
aagtcagttgagaaaatgtccaaaaatgattggggagcagcatggaaaagtgaaattattcagggtca--ttagcacagatgacatacaaaatcactgtc |
205 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||||| | |||||| |||||||||||||||| | ||| | | ||||||| |||||| || |
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|
| T |
36874788 |
aagtcagtagtgaaaatgtctgaaaatgattggggagcagcaag-aaaagtaaaattattcagggtcacatgtgcaaa-aggacataccaaatcagcatc |
36874691 |
T |
|
| Q |
206 |
aagttcatcaaaaactgtcttcaagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaagtt |
305 |
Q |
| |
|
|| | |||||| |||||||||||||||||||||||||| ||| |||||||||||||||| || |||||||||| | |||||||||||||| | | | |
|
|
| T |
36874690 |
aaatgattcaaaagttgtcttcaagaaatcaattgcttcatgtgtcaattcaacactctgcaaacgttaaatccaaagagaatagaataagatataggat |
36874591 |
T |
|
| Q |
306 |
ccatgttgtcaactaattgaatacaaacaggtataacatactaagaacataaatcatgaggccacaattcatctcaaaagaaa--------------cac |
391 |
Q |
| |
|
| | |||||||| ||||||| |||||||||||||||||| |||| ||||| ||| || ||| ||||| || ||| ||| ||| |
|
|
| T |
36874590 |
ctaagttgtcaagaaattgaacacaaacaggtataacatataaagagcataattcacaagaccaagattcaactagaaaaaaagagaataaaaaaagcac |
36874491 |
T |
|
| Q |
392 |
ctgatcaggtgcacgtttcaaaggtggaattaaatcatcagcaagcttgatatcatcattatatccaaacctcctgagcacagtccatgttgtctcaaga |
491 |
Q |
| |
|
||||||||| | || ||||||||||||| | |||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||| ||||||||| |
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|
| T |
36874490 |
ctgatcaggagtgcgcttcaaaggtggaactgcatcatcagcaagcttgatttcatcattatatccgaactttctgagcacagtccatgtagtctcaaga |
36874391 |
T |
|
| Q |
492 |
ggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgttcattcacaccttcagacaatt |
573 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| || |||||||||||||||| |
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|
| T |
36874390 |
cgccctttttctatgaaaagggcatgaagaaatagaaatcccgtcaaagtaagtcctcgttcgttaacaccttcagacaatt |
36874309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 36874911 - 36874833
Alignment:
| Q |
16 |
atatgaggaaagcagtctacatgtccggagcagtagaaaacaattcttcaagttcacagggttggagcatcccatccta |
94 |
Q |
| |
|
|||| |||| |||| ||||| | ||||| ||||| |||||||||||||||||||||| ||| | | |||||||||||| |
|
|
| T |
36874911 |
atattaggatagcaatctacctttccggggcagtggaaaacaattcttcaagttcacggggacgcaacatcccatccta |
36874833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 364 - 480
Target Start/End: Complemental strand, 53866755 - 53866639
Alignment:
| Q |
364 |
aggccacaattcatctcaaaagaaacacctgatcaggtgcacgtttcaaaggtggaattaaatcatcagcaagcttgatatcatcattatatccaaacct |
463 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| |||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53866755 |
aggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaacct |
53866656 |
T |
|
| Q |
464 |
cctgagcacagtccatg |
480 |
Q |
| |
|
| |||| |||||||| |
|
|
| T |
53866655 |
tttaagcatagtccatg |
53866639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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