View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19606_low_13 (Length: 227)

Name: NF19606_low_13
Description: NF19606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19606_low_13
NF19606_low_13
[»] chr3 (1 HSPs)
chr3 (1-209)||(1149694-1149904)
[»] chr5 (1 HSPs)
chr5 (1-55)||(14725277-14725332)
[»] chr7 (3 HSPs)
chr7 (17-55)||(10040834-10040872)
chr7 (20-56)||(13703025-13703061)
chr7 (17-56)||(29285585-29285625)
[»] chr2 (3 HSPs)
chr2 (2-56)||(13277932-13277986)
chr2 (1-68)||(7301593-7301661)
chr2 (1-56)||(23914575-23914631)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1149694 - 1149904
Alignment:
Q  1 caaatttgtctgtaacaatgttataatgttggtgttattgaaaaaa-taagaatttaaatttatttttt-agacaaattcacattatatttgtcatatat 98  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||      
T  1149694 caaatttgcctgtaacaatgttataatgttggtgttattgaaaaaaataagaatttaaatttatttttttagacaaattcacattatatttgtcatat-- 1149791  T
Q  99 tgttactaaaagataaatatagtttgttatatcaaaataacattatatttatgatattgttactaaaagataaac-atagtttgttacatc-aaatacag 196  Q
    | ||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| ||||||| |||| |||    
T  1149792 tattattaaaagataaacatagtttgttatatcaaaatcacattatatttgtgatattgttactaaaagataaacaatagtttattacatcaaaatccag 1149891  T
Q  197 tagaaatacatat 209  Q
    |||||||||||||    
T  1149892 tagaaatacatat 1149904  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 14725277 - 14725332
Alignment:
Q  1 caaatttgtctgtaacaatgttataatgttggtgttattgaaaaa-ataagaattt 55  Q
    ||||||||| ||||| ||||||||| || |||||||||||||||| ||||||||||    
T  14725277 caaatttgtgtgtaagaatgttatattgctggtgttattgaaaaatataagaattt 14725332  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 10040872 - 10040834
Alignment:
Q  17 aatgttataatgttggtgttattgaaaaaataagaattt 55  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  10040872 aatgttatattgttggtgttattgaaaaaataagcattt 10040834  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 13703025 - 13703061
Alignment:
Q  20 gttataatgttggtgttattgaaaaaataagaattta 56  Q
    |||||| |||||||||||||||| |||||||||||||    
T  13703025 gttatattgttggtgttattgaacaaataagaattta 13703061  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 29285585 - 29285625
Alignment:
Q  17 aatgttataatgttggtgttattgaaaaa-ataagaattta 56  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  29285585 aatgttatattgttggtgttattgaaaaacataagaattta 29285625  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 13277932 - 13277986
Alignment:
Q  2 aaatttgtctgtaacaatgttataatgttggtgttattgaaaaaataagaattta 56  Q
    ||||||| || ||||||||||||| |||| ||||||||||||| |||| ||||||    
T  13277932 aaatttgcctataacaatgttatattgttagtgttattgaaaagataataattta 13277986  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 7301593 - 7301661
Alignment:
Q  1 caaatttgtctgtaacaatgttataatgttggtgttattgaaaaa-ataagaatttaaatttatttttt 68  Q
    ||||||||||| ||| ||| ||||| ||||||||||||| ||||| || ||||||||||| | ||||||    
T  7301593 caaatttgtctataaaaatattatattgttggtgttattcaaaaagattagaatttaaatatttttttt 7301661  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23914575 - 23914631
Alignment:
Q  1 caaatttgtctgtaacaatgttataatgttggtgttattgaaaaa-ataagaattta 56  Q
    |||||||| || ||| ||||||||| |||| |||||||||||||| |||||||||||    
T  23914575 caaatttggctataagaatgttatattgtttgtgttattgaaaaagataagaattta 23914631  T

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