View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19606_low_3 (Length: 487)
Name: NF19606_low_3
Description: NF19606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19606_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 3131900 - 3132361
Alignment:
| Q |
18 |
gtgaggagttgtacctgtgtattcaacgaagtctctcataatcatactgttgtataatatccaagcaagcttgtgttgtgcgatatgtgaatacatactt |
117 |
Q |
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| T |
3131900 |
gtgaggagttgtacctgtgtattcaacgaagtctctcataatcacactgttgtataatatccaagcaagcttgtgttgtgcgatatgtgaatacatactt |
3131999 |
T |
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| Q |
118 |
gatgccaatacaataatgtcgcaacgnnnnnnnnngtgatggtatcggtaattgtgttatagtccatgtaatatatgttacagttacacacgtgatattg |
217 |
Q |
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| T |
3132000 |
gatgccaatacaataatgtcgcaacgaaaaaaaaagtgatggtatcggtaattgtgttatagtccatgtaatatatgttacagttacacacgtgatattg |
3132099 |
T |
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| Q |
218 |
cattcttatttcatgaacatctacttgacagtggccacactatgtctaacaaagaccaacctgtgtgatttaatattgcaggagaaggtacggggcttct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3132100 |
cattcttatttcatgaacatctacttgacagtggccacactatatctaacaaagaccaacctgtgtgatttaatattgcaggagaaggtacggggcttct |
3132199 |
T |
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| Q |
318 |
tcgcctccatagtacataccgccatgaccttaagatttacagctctgatgagggtcgtgtgcaggtatgccctgagtagcactcacctttcctcctaatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3132200 |
tcgcctccatagtacataccgccatgaccttaagatttacagctctgatgagggtcgtgtgcaggtatgccctgagtagcactcacctttcctcctaatc |
3132299 |
T |
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| Q |
418 |
aaaagaaggctttaagtggtttaattagtggttggttactacatttgttctgtatttcttct |
479 |
Q |
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| T |
3132300 |
aaaagaaggctttaagtggtttaattagtggttggttactacatttgttctgtatttcttct |
3132361 |
T |
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Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 292 - 386
Target Start/End: Original strand, 1925988 - 1926082
Alignment:
| Q |
292 |
attgcaggagaaggtacggggcttcttcgcctccatagtacataccgccatgaccttaagatttacagctctgatgagggtcgtgtgcaggtatg |
386 |
Q |
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||||||||||||||||| || || |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1925988 |
attgcaggagaaggtacaggcctgcttcgcctccatagtacatatcgtcatgatcttaagatttacagctctgatgagggtcgtgtgcaggtatg |
1926082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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