View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19606_low_6 (Length: 289)
Name: NF19606_low_6
Description: NF19606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19606_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 8963271 - 8963538
Alignment:
| Q |
9 |
gacatcatcagacatatttgataacactaaggaacttatcaaagacattggaaaagataacatagcagcaacaccttttgcattgggagctggtcatatc |
108 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8963271 |
gacaacatcagacatatttgataacactaaggaacttatcaaagacattggaaaagataacatagcagcaacaccttttgcattgggagctggtcatatc |
8963370 |
T |
|
| Q |
109 |
aaccctaataaagcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttgtgcacttaacttcacacaaaaacacatta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8963371 |
aaccctaataaagcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttgtgcacttaacttcacacaaaaacacatta |
8963470 |
T |
|
| Q |
209 |
ctgccataacaagatcatcgtccaatgattgttctaatccttccttgcatcttaactacccttctttt |
276 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
8963471 |
ctgccataacaagatcatcatccaatgattgttctaatccttccttgcatctcaactacccttctttt |
8963538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 8958267 - 8958524
Alignment:
| Q |
19 |
gacatatttgataacactaaggaacttatcaaagacattggaaaagataacatagcagcaacaccttttgcattgggagctggtcatatcaaccctaata |
118 |
Q |
| |
|
|||||| ||||||| |||||||||| ||| |||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||| | || || |||| |
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| T |
8958267 |
gacataattgataatactaaggaacatattaaagacattggaaatgataataaagcagcaactccttttgcattgggagctggtcatgttaatccaaata |
8958366 |
T |
|
| Q |
119 |
aagcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttgtgcacttaacttcacacaaaaacacattactgccataac |
218 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| || | |||||||| |||| |||||||| || |
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| T |
8958367 |
gagcacttgaccctggtcttatttatgatgttggtgtacaagattatgttaatcttctttgtgcacttagctactcacaaaaaaacatcactgccatcac |
8958466 |
T |
|
| Q |
219 |
aagatcatcgtccaatgattgttctaatccttccttgcatcttaactacccttctttt |
276 |
Q |
| |
|
|||||| || || |||||||| ||| | ||||| ||| |||||||||||||||||||| |
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|
| T |
8958467 |
aagatcttcttcgaatgattgctctgaaccttctttggatcttaactacccttctttt |
8958524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 8974667 - 8974934
Alignment:
| Q |
9 |
gacatcatcagacatatttgataacactaaggaacttatcaaagacattggaaaagataacatagcagcaacaccttttgcattgggagctggtcatatc |
108 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| || |||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||| |
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|
| T |
8974667 |
gacaacatcagacatatttgataatactaaggaactcataaaagacattggaaaaggtaacaacgtagcaacaccttttgcacaaggagctggtcatatc |
8974766 |
T |
|
| Q |
109 |
aaccctaataaagcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttgtgcacttaacttcacacaaaaacacatta |
208 |
Q |
| |
|
||||| || ||||||||| ||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| |||| | |
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| T |
8974767 |
aaccccaacaaagcacttaaccctggacttgtttatgatgttggtgtacaagattatgtcaatcttctttgtgcactcaacttcacacaaaaaaacatca |
8974866 |
T |
|
| Q |
209 |
ctgccataacaagatcatcgtccaatgattgttctaatccttccttgcatcttaactacccttctttt |
276 |
Q |
| |
|
|| ||| |||||||| || | |||||||||||||| ||||| ||| |||| || |||||||||||| |
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| T |
8974867 |
ctatcattacaagatcttctactaatgattgttctaaaccttcgttggatctcaattacccttctttt |
8974934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 8945813 - 8945546
Alignment:
| Q |
9 |
gacatcatcagacatatttgataacactaaggaacttatcaaagacattggaaaagataacatagcagcaacaccttttgcattgggagctggtcatatc |
108 |
Q |
| |
|
|||| ||||| |||||| |||||| |||||||||| |||||||||||||| ||||| ||| || ||||| ||| ||||||||||||||||| || | |
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|
| T |
8945813 |
gacaacatcaaacatatatgataatactaaggaacatatcaaagacattgaaaaaggtaatgaagttgcaactcctcttgcattgggagctggttatgtt |
8945714 |
T |
|
| Q |
109 |
aaccctaataaagcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttgtgcacttaacttcacacaaaaacacatta |
208 |
Q |
| |
|
| || |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | |
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|
| T |
8945713 |
gatcccaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacaaaaaaacatca |
8945614 |
T |
|
| Q |
209 |
ctgccataacaagatcatcgtccaatgattgttctaatccttccttgcatcttaactacccttctttt |
276 |
Q |
| |
|
|| | || |||||||| || | ||||||||||||||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
8945613 |
ctacgattacaagatcctctttcaatgattgttctaaaccttccttggatcttaattacccttctttt |
8945546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 9948272 - 9948017
Alignment:
| Q |
21 |
catatttgataacactaaggaacttatcaaagacattggaaaagataacatagcagcaacaccttttgcattgggagctggtcatatcaaccctaataaa |
120 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||| ||| ||| ||||| || ||||| ||| ||||||| |||||| || || | | ||| || | |
|
|
| T |
9948272 |
catatttgataatgctaaggaacatatcaaagacatcggagaaggtaacaaagttgcaactcctcttgcattaggagctagttatgttgatactactaga |
9948173 |
T |
|
| Q |
121 |
gcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttgtgcacttaacttcacacaaaaacacattactgccataacaa |
220 |
Q |
| |
|
|| |||||||| |||||| ||||||| |||||| |||||||||||||||| |||| | || ||||||||||||||| ||||| || ||| |||| |||| |
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|
| T |
9948172 |
gcgcttgaccccggtcttctttatgacgttggtgcacaagattatgttaatcttctctatggacttaacttcacacagaaacatatcactaccattacaa |
9948073 |
T |
|
| Q |
221 |
gatcatcgtccaatgattgttctaatccttccttgcatcttaactacccttctttt |
276 |
Q |
| |
|
|||| | | ||||||||| ||||| ||||| ||| || ||||| |||||| |||| |
|
|
| T |
9948072 |
gatccacattcaatgattgctctaaaccttcattggatattaaccacccttttttt |
9948017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 9949424 - 9949356
Alignment:
| Q |
134 |
gtcttgtttatgatattggtgtacaagattatgttaattttctttgtgcacttaacttcacacaaaaac |
202 |
Q |
| |
|
|||||||||||||| |||||||| | ||||| ||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
9949424 |
gtcttgtttatgatgttggtgtaagacattatcttaatcttctttgtgcacttaacttcacaccaaaac |
9949356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 21686976 - 21686709
Alignment:
| Q |
9 |
gacatcatcagacatatttgataacactaaggaacttatcaaagacattggaaaagataacatagcagcaacaccttttgcattgggagctggtcatatc |
108 |
Q |
| |
|
|||| ||||||||||||| || || |||||||||| |||||||||||||||||| | ||||| ||||||||| |||||||||||||||||||||||||| |
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|
| T |
21686976 |
gacaacatcagacatattagacaatactaaggaacatatcaaagacattggaaatggtaacagagcagcaactccttttgcattgggagctggtcatatt |
21686877 |
T |
|
| Q |
109 |
aaccctaataaagcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttgtgcacttaacttcacacaaaaacacatta |
208 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| | |
|
|
| T |
21686876 |
aaccctaatagagcacttgatcctggtcttgtttatgatatcggtgtacaagattatattaatcttctttgtgcacttaacttcacacaaaaaaacatca |
21686777 |
T |
|
| Q |
209 |
ctgccataacaagatcatcgtccaatgattgttctaatccttccttgcatcttaactacccttctttt |
276 |
Q |
| |
|
|||||| |||||||| || | ||||||||| ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
21686776 |
gtgccattacaagatcttctttcaatgattgctctaaaccttccttagatcttaactacccttctttt |
21686709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 34962593 - 34962329
Alignment:
| Q |
9 |
gacatcatcagacatatttgataacactaaggaacttatcaaagacattggaaaagataacatagcagcaacaccttttgcattgggagctggtcatatc |
108 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| |||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| | |
|
|
| T |
34962593 |
gacaacatcagacatatttgataattctaaggaacaaatcaaagacattggaacagacaa---agcagcaacaccttttgcattgggagctggtcatgtt |
34962497 |
T |
|
| Q |
109 |
aaccctaataaagcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttgtgcacttaacttcacacaaaaacacatta |
208 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| | | |||||||| |||| | |
|
|
| T |
34962496 |
aatcctaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgtgaatcttctttgtgcacttaaatactcacaaaaaaacatca |
34962397 |
T |
|
| Q |
209 |
ctgccataacaagatcatcgtccaatgattgttctaatccttccttgcatcttaactacccttctttt |
276 |
Q |
| |
|
|| |||| |||||||| || ||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
34962396 |
ctaccatcacaagatcctcttccaatgattgttctaaaccttccttggatcttaactacccttctttt |
34962329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 49008416 - 49008601
Alignment:
| Q |
9 |
gacatcatcagacatatttgataacactaaggaacttatcaaagacattggaaaagataacatagcagcaacaccttttgcattgggagctggtcatatc |
108 |
Q |
| |
|
|||| |||||||||| || || ||||| || ||||| |||| ||||||||| || | | ||| | |||| ||||||| || |||||||| || |||||| |
|
|
| T |
49008416 |
gacaacatcagacatgttagacaacacaaaagaactcatcacagacattggtaatggttacagaccagcttcacctttagctttgggagccggacatatc |
49008515 |
T |
|
| Q |
109 |
aaccctaataaagcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttgtgcacttaacttcac |
194 |
Q |
| |
|
|| || |||| ||||||||| ||||| |||||||||||| || |||||||||||| ||| |||| |||||| | |||||||| |
|
|
| T |
49008516 |
aatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaaacttcac |
49008601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 19375655 - 19375591
Alignment:
| Q |
41 |
aacttatcaaagacattggaaaagataacatagcagcaacaccttttgcattgggagctggtcat |
105 |
Q |
| |
|
||||||| |||||||||||||||| ||||| | ||||| | ||||||||||||||| |||||| |
|
|
| T |
19375655 |
aacttatgaaagacattggaaaaggtaacaaaattgcaactctttttgcattgggagccggtcat |
19375591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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