View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19607_high_1 (Length: 360)
Name: NF19607_high_1
Description: NF19607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19607_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 43378613 - 43378951
Alignment:
| Q |
1 |
cagtagtacttcattacgttctctttcttcttatttactattccaattatgtgtttctgctatctttgttttttagtttcgtaatatgtatgttcttgct |
100 |
Q |
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| T |
43378613 |
cagtagtacttcattactttctctttcttcttatttactattccaattatgtgtttctgctatctttgttttttagtttcgtaatatgtatgttcttgct |
43378712 |
T |
|
| Q |
101 |
tcttaatgaaactattacatgatcgatcaatttgctattagtattacactacaacttacatactcaatttatgcattaaaatatattttgacaatctcaa |
200 |
Q |
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| T |
43378713 |
tctcaatgaaactattacatgatcgatcaatttgctattagtattacactacaacttacatacttaatttatgcattaaaatatattttgacaatctcaa |
43378812 |
T |
|
| Q |
201 |
tg--nnnnnnnnnattcaagctcgactgattacaatttaggaggaaaaggaggaagcaaatcggtccttgcagctgtaataatgggtaaagttttgctag |
298 |
Q |
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| T |
43378813 |
tgtttttttttttattcaagctcgactgattacaattt---------aggaggaagcaaatcggtccttgcagctgtaataatggctaaagttttgctag |
43378903 |
T |
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| Q |
299 |
gaatgccgggaccatgggcaaacgattatcgcgaactatccgatccct |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43378904 |
gaatgccgggaccatgggcaaacgattatcgcgaactatccgatccct |
43378951 |
T |
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