View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19607_low_1 (Length: 328)
Name: NF19607_low_1
Description: NF19607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19607_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 18220885 - 18220719
Alignment:
| Q |
1 |
taaaaagtctgagaaagcagtgaatgacaccaagaatcaggaacttgtggtttatagaagaaacaagccaaaaatatggattgatagatgggctgctgat |
100 |
Q |
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| T |
18220885 |
taaaaagtctgagaaagcagtgaatgacaccaagaagcaggaacttgtggtttatagaagaaacaagccaaaaatatggattgatagatgggctgctgag |
18220786 |
T |
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| Q |
101 |
aggtaaatggttatttgtattcaaagatgtaaccnnnnnnncagtacacagttcagttttccacttg |
167 |
Q |
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| T |
18220785 |
aggtaaatggttatttgtatttaaagatgtaacctttttttcagtacacagttcagttttccacttg |
18220719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 18220654 - 18220575
Alignment:
| Q |
232 |
cttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaact |
311 |
Q |
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| T |
18220654 |
cttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaact |
18220575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 2 - 167
Target Start/End: Complemental strand, 43012659 - 43012495
Alignment:
| Q |
2 |
aaaaagtctgagaaagcagtgaatgacaccaagaatcaggaacttgtggtttatagaagaaacaagccaaaaatatggattgatagatgggctgctgata |
101 |
Q |
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| T |
43012659 |
aaaaaatctaagaaagcagtgaatgacaccaagaagcaggaactcgtggtttatagcagaaacaagccaaaactagggatttatagatgggctgctgaga |
43012560 |
T |
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| Q |
102 |
ggtaaatggttatttgtattcaaagatgtaaccnnnnnnncagtacacagttcagttttccacttg |
167 |
Q |
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| T |
43012559 |
ggtaaatggttatttgtattcatagatgtaacc-ttttttcaatacacagttcagttttccacttg |
43012495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 43012431 - 43012351
Alignment:
| Q |
231 |
ccttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaact |
311 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43012431 |
ccttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaact |
43012351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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