View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19608_high_1 (Length: 417)
Name: NF19608_high_1
Description: NF19608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19608_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 17328027 - 17328278
Alignment:
| Q |
1 |
ttagtcctaatgtatagaaggaaattgtggatgaagggttgaaactagcaccacctaagattcttccaataaggcttattgtgaggatgattattgtgtt |
100 |
Q |
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| T |
17328027 |
ttagtcctaatgtgtagaaggaaattgtggatgaagggttaaaactagcaccacctaagattcttccaataaggcttattgtgaggatgattattgtgtt |
17328126 |
T |
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| Q |
101 |
taggatggttgtgatgaataggcctggtagtgaaagtggttgaaggttgagaaatagagatgtttttgtagagagaattcttaatgttgagatgaagaaa |
200 |
Q |
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| T |
17328127 |
taggatggttgtgatgaataagcctggtagtgaaagtggttgaaggttgagaaaaagagatgtttttgtagagagaattcttaatgttgagatgaagaaa |
17328226 |
T |
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| Q |
201 |
acaaatattgatgttagaattgcatctcctatggctgatttaatcactccca |
252 |
Q |
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| T |
17328227 |
acaaatattgatgttagaattgcatctcctatggctgatttaatcactccca |
17328278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 363
Target Start/End: Original strand, 17328339 - 17328391
Alignment:
| Q |
311 |
attggtattggaacttggaagatgaaacactctcactcacttattttggatgt |
363 |
Q |
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| T |
17328339 |
attggtattggaacttggaagatgaaacactctcactcacatattttggatgt |
17328391 |
T |
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