View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19608_low_3 (Length: 410)
Name: NF19608_low_3
Description: NF19608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19608_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 23 - 401
Target Start/End: Original strand, 37977413 - 37977790
Alignment:
| Q |
23 |
ctcaatccaccttgtcaatcagacggtgacttgatcaatctcacttcaacaaaaataagggatacgcgtgcttcaaaactcaactcatatccgcttttcc |
122 |
Q |
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| T |
37977413 |
ctcaatccaccttgtcaatcagacggtgacttgatcaatctcacttcaacaaaaataagggatatgcgtggttcaaaactcaactcatatccgtttttcc |
37977512 |
T |
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| Q |
123 |
atgctttggtcaaattgacactgatcaagtcactgtctcaattgtaaggacaagaaggaccgagagcttctacttcagggggacgtcgtcgattgccatt |
222 |
Q |
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| T |
37977513 |
atgctttggtcaaattgacactgatcaagtcactgtctcaattgtaaggacaagaaggaccgagagcttctacttcagagggacgtcgtcgattgccatt |
37977612 |
T |
|
| Q |
223 |
agagttttgagctgtttataaagactggtccatggtgaaccacctatcaatgtgatccacaatagaactcaccactaaaataaccaaaagatattccaaa |
322 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37977613 |
agagttttgagcagtttataaagactggtccatggtgaaccacctatcaatgtgatccacaatagaactcaccactaaaataaccaaaagatattccaaa |
37977712 |
T |
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| Q |
323 |
aaggatccctaaaagattacagtacataagatctaacaagcttaatgcctaattatgcatgcaactaactaagtattat |
401 |
Q |
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| T |
37977713 |
caggatccctaaaagattacagtacataagatctaacaagcttaatgcctaatcatgcatgcaactaac-aagtattat |
37977790 |
T |
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