View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19608_low_4 (Length: 283)
Name: NF19608_low_4
Description: NF19608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19608_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 44258612 - 44258862
Alignment:
| Q |
16 |
ctaggcagtcttgagaagcaaaaaactccaattatgaagcaatttttatccttttaaattgagaaacatcacgtaagccatattttccaactttcatt-- |
113 |
Q |
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| T |
44258612 |
ctaggcagtcttgagaaggaaaaa-cttcaattatgaagcaatttttatccttttaaattgagaatcatcatgtaagtcatattttccaactttcattat |
44258710 |
T |
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| Q |
114 |
-tgcaaaagaccaaatagtagacacatgcgatcagaaataataagtggatgaaacctacttaaacatatttcttgagacccaagtaagccttcttatgag |
212 |
Q |
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| T |
44258711 |
ttgcaa--gaccaaatagtagacgcatgtgataaaaaataataagtggatgaaacctact-aaacatatttcttaagacccaagtaaaccttcttatgag |
44258807 |
T |
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| Q |
213 |
taacccagccgaaacaaaccgtcaaaatttagtttttacaactaacatccgccaagaat |
271 |
Q |
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| T |
44258808 |
taacccagccgaaacaaaccatcaaaatttagtttttacaac----atccgccaagaat |
44258862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 44261532 - 44261669
Alignment:
| Q |
49 |
atgaagcaatttttatccttttaaattgagaaacatcacgtaagccatattttccaactttcatttgcaaaagaccaaatagtagacacatgcgatcaga |
148 |
Q |
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| T |
44261532 |
atgaagcaatttttatccttttaaaatggcaatcatgacataagtcatattttccaactttcaattg--aaagaccacatattagacgcatgtgatcaga |
44261629 |
T |
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| Q |
149 |
aataataagtggatgaaacctacttaaacatatttcttgag |
189 |
Q |
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| T |
44261630 |
aatgataagtggttgaaaccta-ttaaacatatttcttgag |
44261669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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