View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19609_high_2 (Length: 278)

Name: NF19609_high_2
Description: NF19609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19609_high_2
NF19609_high_2
[»] chr8 (10 HSPs)
chr8 (76-198)||(14790691-14790814)
chr8 (76-197)||(14791449-14791570)
chr8 (79-198)||(20112271-20112389)
chr8 (83-191)||(20111519-20111625)
chr8 (79-164)||(21190065-21190151)
chr8 (76-107)||(767669-767700)
chr8 (76-107)||(11681632-11681663)
chr8 (76-107)||(14864991-14865022)
chr8 (76-107)||(32672309-32672340)
chr8 (76-107)||(35124690-35124721)
[»] chr6 (15 HSPs)
chr6 (76-198)||(15347451-15347574)
chr6 (80-198)||(17732810-17732928)
chr6 (76-191)||(15348198-15348312)
chr6 (80-198)||(6009422-6009540)
chr6 (79-198)||(30709513-30709630)
chr6 (76-197)||(6008660-6008781)
chr6 (80-198)||(30710273-30710390)
chr6 (76-197)||(17732034-17732155)
chr6 (76-107)||(1387656-1387687)
chr6 (76-107)||(4137674-4137705)
chr6 (76-107)||(4138979-4139010)
chr6 (76-107)||(10917878-10917909)
chr6 (76-106)||(10919337-10919367)
chr6 (79-107)||(1378477-1378505)
chr6 (79-107)||(1386225-1386253)
[»] chr3 (21 HSPs)
chr3 (76-198)||(54560052-54560175)
chr3 (76-198)||(50838253-50838375)
chr3 (76-197)||(54560812-54560933)
chr3 (79-198)||(43546388-43546507)
chr3 (76-197)||(1576505-1576626)
chr3 (76-197)||(1577506-1577626)
chr3 (76-197)||(50837479-50837599)
chr3 (80-198)||(47471470-47471588)
chr3 (76-198)||(35942117-35942241)
chr3 (125-198)||(47470763-47470835)
chr3 (79-183)||(50382749-50382853)
chr3 (82-191)||(35942778-35942887)
chr3 (76-108)||(51149984-51150016)
chr3 (76-108)||(52947850-52947882)
chr3 (76-107)||(1136259-1136290)
chr3 (76-107)||(49726051-49726082)
chr3 (76-107)||(52116929-52116960)
chr3 (76-107)||(52118328-52118359)
chr3 (76-107)||(52946385-52946416)
chr3 (76-183)||(31800374-31800480)
chr3 (138-191)||(50381934-50381986)
[»] chr2 (8 HSPs)
chr2 (76-198)||(4592646-4592769)
chr2 (76-197)||(4593399-4593519)
chr2 (77-191)||(22539115-22539226)
chr2 (135-198)||(10255748-10255810)
chr2 (81-191)||(33002900-33003009)
chr2 (81-170)||(33003741-33003831)
chr2 (79-130)||(45114954-45115006)
chr2 (80-197)||(10256485-10256601)
[»] chr5 (19 HSPs)
chr5 (79-198)||(5347745-5347865)
chr5 (76-198)||(36429301-36429423)
chr5 (76-197)||(5348501-5348622)
chr5 (77-197)||(31808297-31808417)
chr5 (80-197)||(29500700-29500817)
chr5 (80-198)||(36681845-36681961)
chr5 (82-191)||(10326845-10326955)
chr5 (77-198)||(29500028-29500150)
chr5 (82-198)||(7491273-7491392)
chr5 (138-198)||(36430060-36430119)
chr5 (76-108)||(38561205-38561237)
chr5 (77-109)||(43492563-43492595)
chr5 (76-107)||(17641780-17641811)
chr5 (76-107)||(19897411-19897442)
chr5 (80-190)||(33136590-33136700)
chr5 (76-107)||(34088594-34088625)
chr5 (79-131)||(971301-971352)
chr5 (76-104)||(26626638-26626666)
chr5 (76-104)||(38559590-38559618)
[»] chr4 (20 HSPs)
chr4 (76-198)||(27454935-27455057)
chr4 (76-197)||(621531-621652)
chr4 (113-191)||(11147802-11147879)
chr4 (78-198)||(21225819-21225938)
chr4 (79-197)||(620492-620610)
chr4 (78-191)||(31633614-31633726)
chr4 (80-164)||(49682059-49682143)
chr4 (14-56)||(24963703-24963745)
chr4 (76-107)||(2613650-2613681)
chr4 (76-107)||(3880873-3880904)
chr4 (76-107)||(16508207-16508238)
chr4 (76-107)||(50663014-50663045)
chr4 (76-107)||(50664486-50664517)
chr4 (76-107)||(52897778-52897809)
chr4 (76-107)||(56065215-56065246)
chr4 (76-106)||(677065-677095)
chr4 (111-191)||(31632437-31632514)
chr4 (82-197)||(49681288-49681402)
chr4 (80-108)||(52896329-52896357)
chr4 (76-104)||(55978494-55978522)
[»] chr7 (11 HSPs)
chr7 (76-190)||(3987239-3987352)
chr7 (80-198)||(30480689-30480808)
chr7 (81-191)||(32390892-32391000)
chr7 (82-182)||(6733042-6733141)
chr7 (79-186)||(36068113-36068220)
chr7 (76-191)||(41589203-41589315)
chr7 (78-198)||(36067317-36067435)
chr7 (79-191)||(6733140-6733250)
chr7 (76-107)||(31285489-31285520)
chr7 (76-107)||(31286930-31286961)
chr7 (78-107)||(35394776-35394805)
[»] scaffold0102 (2 HSPs)
scaffold0102 (78-198)||(32372-32493)
scaffold0102 (80-198)||(33138-33257)
[»] chr1 (15 HSPs)
chr1 (78-197)||(27585312-27585429)
chr1 (79-198)||(47445769-47445889)
chr1 (78-197)||(36475966-36476085)
chr1 (80-196)||(36475295-36475411)
chr1 (76-191)||(47445007-47445122)
chr1 (114-170)||(26991038-26991094)
chr1 (76-107)||(11343419-11343450)
chr1 (76-107)||(11501439-11501470)
chr1 (76-107)||(14282799-14282830)
chr1 (76-107)||(14284258-14284289)
chr1 (80-191)||(27585987-27586096)
chr1 (76-107)||(38482531-38482562)
chr1 (80-191)||(45575952-45576061)
chr1 (111-163)||(786791-786843)
chr1 (79-107)||(42813860-42813888)


Alignment Details
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 14790691 - 14790814
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccct-taatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||||||||   || |||||||||||||| |||||||||||| |||||||||    
T  14790691 cccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccg 14790790  T
Q  175 tttgttttggctgttaagtgacta 198  Q
    ||||||||||||||||||||||||    
T  14790791 tttgttttggctgttaagtgacta 14790814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 14791570 - 14791449
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    |||||||||||||| ||||||||||||| |||| | ||||||| |||||||||||||   || |||||||  ||||| |||||||||||| |||| ||||    
T  14791570 cccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaaaccccctgaaattgacaaacgttagtcaattac-ccccctccg 14791472  T
Q  175 tttgttttggctgttaagtgact 197  Q
    ||||||||||||||||| |||||    
T  14791471 tttgttttggctgttaaatgact 14791449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 20112389 - 20112271
Alignment:
Q  79 ctgaaattgtaactttcgtcaaaaac-cccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgttt 177  Q
    ||||||||||||||||||| |||||  ||| | |||||||||||||||||||||   |  |||||||||||||| |||||||||||| |||  |||||||    
T  20112389 ctgaaattgtaactttcgtaaaaaaaacccctgatttttaagaaacttcaaaaaccccactgaaattatcaaacgttagtcaattaccccc--tccgttt 20112292  T
Q  178 gttttggctgttaagtgacta 198  Q
    |||||||||||||| ||||||    
T  20112291 gttttggctgttaaatgacta 20112271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 20111519 - 20111625
Alignment:
Q  83 aattgtaactttcgtcaaaaaccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttgtttt 182  Q
    ||||||| |||||||||||| ||||| |||||||| |||| |||||||||   | | ||||| |||||| |||||||||||| |||| ||||||||||||    
T  20111519 aattgtagctttcgtcaaaaccccct-aatttttaggaaatttcaaaaatcctcctaaaattgtcaaacattagtcaattac-ccccctccgtttgtttt 20111616  T
Q  183 ggctgttaa 191  Q
     ||||||||    
T  20111617 agctgttaa 20111625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 21190065 - 21190151
Alignment:
Q  79 ctgaaattgtaactttcgtcaaaa-accccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattac 164  Q
    |||||||| ||||||| ||||||| ||||||| | ||||||| ||||| |||||  ||| |||||||||||||| ||||||||||||    
T  21190065 ctgaaattataacttttgtcaaaagaccccttgaattttaaggaactttaaaaaactccatgaaattatcaaacgttagtcaattac 21190151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 767700 - 767669
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  767700 cccctgaaattgtaactttcgtcaaaaacccc 767669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 11681663 - 11681632
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  11681663 cccctgaaattgtaactttcgtcaaaaacccc 11681632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 14864991 - 14865022
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  14864991 cccctgaaattgtaactttcgtcaaaaacccc 14865022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 32672309 - 32672340
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  32672309 cccctgaaattgtaactttcgtcaaaaacccc 32672340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 35124721 - 35124690
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  35124721 cccctgaaattgtaactttcgtcaaaaacccc 35124690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 15347451 - 15347574
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccct-taatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||||||||   || |||||||||||||| |||||||||||| |||||||||    
T  15347451 cccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccg 15347550  T
Q  175 tttgttttggctgttaagtgacta 198  Q
    ||||||||||||||||||||||||    
T  15347551 tttgttttggctgttaagtgacta 15347574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 17732928 - 17732810
Alignment:
Q  80 tgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttg 178  Q
    |||||||||||||||||||||||| |||| | |||||||||||||||||||||   || |||||||||||||| |||| ||||||| |||| ||||||||    
T  17732928 tgaaattgtaactttcgtcaaaaaaccccctgatttttaagaaacttcaaaaacccccctgaaattatcaaacgttagccaattac-ccccctccgtttg 17732830  T
Q  179 ttttggctgttaagtgacta 198  Q
    ||||||||||||| ||||||    
T  17732829 ttttggctgttaaatgacta 17732810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 15348312 - 15348198
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaaccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgt 175  Q
    |||||||||||||| ||||||||||||| ||| | ||||||| |||||||||||||   || |||||||  ||||| |||||||||||| ||||||||||    
T  15348312 cccctgaaattgtagctttcgtcaaaaatcccctgatttttaggaaacttcaaaaaaccccctgaaattgacaaacgttagtcaattac-ccccttccgt 15348214  T
Q  176 ttgttttggctgttaa 191  Q
    ||||||||||||||||    
T  15348213 ttgttttggctgttaa 15348198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 6009540 - 6009422
Alignment:
Q  80 tgaaattgtaactttcgtcaaaaaccc-cttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttg 178  Q
    ||||||| |||||||||||||||||   | | ||||||||||||||||||||| | || |||||||||||||| ||||||||||| ||||  ||||||||    
T  6009540 tgaaattataactttcgtcaaaaactttcctgatttttaagaaacttcaaaaactcccctgaaattatcaaacgttagtcaatta-tccctctccgtttg 6009442  T
Q  179 ttttggctgttaagtgacta 198  Q
    ||||||||||||| ||||||    
T  6009441 ttttggctgttaaatgacta 6009422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 30709513 - 30709630
Alignment:
Q  79 ctgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgttt 177  Q
    ||||||||||||||||||||||||| |||| | |||||||||||||||||||||   |  |||||||||||||| | |||| ||||  |||| |||||||    
T  30709513 ctgaaattgtaactttcgtcaaaaatccccctgatttttaagaaacttcaaaaacgcctctgaaattatcaaacgtcagtc-atta--ccccctccgttt 30709609  T
Q  178 gttttggctgttaagtgacta 198  Q
    |||||||||||||| ||||||    
T  30709610 gttttggctgttaaatgacta 30709630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 6008660 - 6008781
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacc-ccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    |||||||||||||| ||||||||||||||| || | ||||||| |||||||||||||   || |||||||  ||||| ||||||||| || |||| |||     
T  6008660 cccctgaaattgtagctttcgtcaaaaacctccctgatttttaggaaacttcaaaaagccccctgaaattgacaaacgttagtcaatcac-ccccctcca 6008758  T
Q  175 tttgttttggctgttaagtgact 197  Q
    ||||||||||||||||| |||||    
T  6008759 tttgttttggctgttaaatgact 6008781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 30710390 - 30710273
Alignment:
Q  80 tgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttg 178  Q
    |||||||||| ||||||||||||| |||| | ||||||| |||||||||||||   || |||||||  ||||| |||||||||||| |||| || |||||    
T  30710390 tgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaa-ccccctgaaattgccaaacgttagtcaattac-ccccatctgtttg 30710293  T
Q  179 ttttggctgttaagtgacta 198  Q
    ||||||||||||| ||||||    
T  30710292 ttttggctgttaaatgacta 30710273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 17732034 - 17732155
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    ||||||||||||||  |||||||||||| |||| | |||||||  ||| ||||||||   || |||||||  ||||| |||||||||||| ||||| |||    
T  17732034 cccctgaaattgtagttttcgtcaaaaatccccctgatttttagaaaatttcaaaaaaccccctgaaattgacaaacgttagtcaattacccccct-ccg 17732132  T
Q  175 tttgttttggctgttaagtgact 197  Q
    ||||||||||||||||| |||||    
T  17732133 tttgttttggctgttaaatgact 17732155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 1387687 - 1387656
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  1387687 cccctgaaattgtaactttcgtcaaaaacccc 1387656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 4137674 - 4137705
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  4137674 cccctgaaattgtaactttcgtcaaaaacccc 4137705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 4139010 - 4138979
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  4139010 cccctgaaattgtaactttcgtcaaaaacccc 4138979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 10917878 - 10917909
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  10917878 cccctgaaattgtaactttcgtcaaaaacccc 10917909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 106
Target Start/End: Complemental strand, 10919367 - 10919337
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaaccc 106  Q
    |||||||||||||||||||||||||||||||    
T  10919367 cccctgaaattgtaactttcgtcaaaaaccc 10919337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 107
Target Start/End: Original strand, 1378477 - 1378505
Alignment:
Q  79 ctgaaattgtaactttcgtcaaaaacccc 107  Q
    |||||||||||||||||||||||||||||    
T  1378477 ctgaaattgtaactttcgtcaaaaacccc 1378505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 107
Target Start/End: Original strand, 1386225 - 1386253
Alignment:
Q  79 ctgaaattgtaactttcgtcaaaaacccc 107  Q
    |||||||||||||||||||||||||||||    
T  1386225 ctgaaattgtaactttcgtcaaaaacccc 1386253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 54560052 - 54560175
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccct-taatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||||||||   || |||||||||||||| |||||||||||| |||||||||    
T  54560052 cccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaacccccatgaaattatcaaacgttagtcaattaccccccttccg 54560151  T
Q  175 tttgttttggctgttaagtgacta 198  Q
    ||||||||||||||||||||||||    
T  54560152 tttgttttggctgttaagtgacta 54560175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 198
Target Start/End: Complemental strand, 50838375 - 50838253
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccct-taatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | || |||||||||||||| |||||||||||| |||| ||||    
T  50838375 cccctgaaattgtaactttcgtcaaaaacccccctaatttttaagaaacttcaaaaactcccctgaaattatcaaacgttagtcaattac-ccccctccg 50838277  T
Q  175 tttgttttggctgttaagtgacta 198  Q
    ||||||||||||||||| ||||||    
T  50838276 tttgttttggctgttaaatgacta 50838253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 54560933 - 54560812
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    |||||||||||||| ||||||||||||| |||| | ||||||| |||||||||||||   || |||||||  ||||| |||||||||||| |||| ||||    
T  54560933 cccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaaaccccctgaaattgacaaacgttagtcaattac-ccccctccg 54560835  T
Q  175 tttgttttggctgttaagtgact 197  Q
    ||||||||||||||||| |||||    
T  54560834 tttgttttggctgttaaatgact 54560812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 43546388 - 43546507
Alignment:
Q  79 ctgaaattgtaactttcgtcaaaaaccc-cttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgttt 177  Q
    ||||||||||||||||||||||||| |  | | |||||||||||||||||||||   |  |||||||||||||| | |||||||||| ||||| ||||||    
T  43546388 ctgaaattgtaactttcgtcaaaaatcttcctgatttttaagaaacttcaaaaacccctctgaaattatcaaacgtcagtcaattacccccct-ccgttt 43546486  T
Q  178 gttttggctgttaagtgacta 198  Q
    |||||||||||||| ||||||    
T  43546487 gttttggctgttaaatgacta 43546507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 1576505 - 1576626
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    |||||||||||||| ||||||||||||| |||| | ||||||| |||||||||||||   || |||||||  ||||| |||||||||||| |||| ||||    
T  1576505 cccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaacccccctgaaattgacaaacgttagtcaattac-ccccctccg 1576603  T
Q  175 tttgttttggctgttaagtgact 197  Q
    |||||||||||| |||| |||||    
T  1576604 tttgttttggctattaaatgact 1576626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 1577626 - 1577506
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    |||||||||||||| ||||||||||||| |||| | ||||||| |||||||||||||   || |||||||  ||||| |||||||||||| |||| ||||    
T  1577626 cccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaa-ccccctgaaattgacaaacgttagtcaattac-ccccctccg 1577529  T
Q  175 tttgttttggctgttaagtgact 197  Q
    ||||||||||||||||| |||||    
T  1577528 tttgttttggctgttaaatgact 1577506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 50837479 - 50837599
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccct-taatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    ||||||||||||||||||||||||||||||||  | |||||||  ||| ||||||||   ||| ||||||  ||||| |||||||||||| ||||| |||    
T  50837479 cccctgaaattgtaactttcgtcaaaaacccccctgatttttagaaaatttcaaaaaccccct-gaaattgacaaacgttagtcaattacccccct-ccg 50837576  T
Q  175 tttgttttggctgttaagtgact 197  Q
    ||||||||||||||||| |||||    
T  50837577 tttgttttggctgttaaatgact 50837599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 47471588 - 47471470
Alignment:
Q  80 tgaaattgtaactttcgtcaaaaacccct-taatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttg 178  Q
    |||||||||| |||||||||||| ||||  | ||||||| |||||||||||||   || |||||||  ||||| |||||||||||| |||| || |||||    
T  47471588 tgaaattgtagctttcgtcaaaaccccccctgatttttaggaaacttcaaaaacccccctgaaattgccaaacgttagtcaattac-ccccctctgtttg 47471490  T
Q  179 ttttggctgttaagtgacta 198  Q
    ||||||||||||| ||||||    
T  47471489 ttttggctgttaaatgacta 47471470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 35942117 - 35942241
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaac-cccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactcc--ccttc 172  Q
    ||||| ||||||||||||||||||||||| | | | |||||||||||||||  |||| | || ||||||| |||||| |||||||| ||| ||  || ||    
T  35942117 cccctaaaattgtaactttcgtcaaaaactctcctgatttttaagaaactt-taaaactcccctgaaattgtcaaacgttagtcaactaccccctccctc 35942215  T
Q  173 cgtttgttttggctgttaagtgacta 198  Q
    | ||||||||||||||||| ||||||    
T  35942216 catttgttttggctgttaaatgacta 35942241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 47470763 - 47470835
Alignment:
Q  125 tcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttgttttggctgttaagtgacta 198  Q
    ||||||||  || |||||||||||||| | |||||||||| ||||| |||||||||||||||||||| ||||||    
T  47470763 tcaaaaatccccctgaaattatcaaacgtcagtcaattacccccct-ccgtttgttttggctgttaaatgacta 47470835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 50382853 - 50382749
Alignment:
Q  79 ctgaaattgtaactttcgtcaaaaac-cccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgttt 177  Q
    ||||||| |||||||||||||||||| ||| | | ||||||||||||||||| |   || ||||||  |||||| |||||||||||| |||||| |||||    
T  50382853 ctgaaatcgtaactttcgtcaaaaactcccctgacttttaagaaacttcaaacacccccatgaaatggtcaaacgttagtcaattacccccctt-cgttt 50382755  T
Q  178 gttttg 183  Q
    ||||||    
T  50382754 gttttg 50382749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 35942887 - 35942778
Alignment:
Q  82 aaattgtaactttcgtcaaaaaccccttaatttttaagaaacttca-aaaatttccttgaaattatcaaactttagtcaattactccccttccgtttgtt 180  Q
    ||||||||| |||||||||||| ||| | | ||||| ||||||||| ||||   |||||||||| | |||| |||||||||||| |||| ||| ||||||    
T  35942887 aaattgtaattttcgtcaaaaatcccctgacttttatgaaacttcaaaaaaaccccttgaaattgttaaacgttagtcaattac-ccccctccatttgtt 35942789  T
Q  181 ttggctgttaa 191  Q
    |||| ||||||    
T  35942788 ttggttgttaa 35942778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 51149984 - 51150016
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccct 108  Q
    |||||||||||||||||||||||||||||||||    
T  51149984 cccctgaaattgtaactttcgtcaaaaacccct 51150016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 52947882 - 52947850
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccct 108  Q
    |||||||||||||||||||||||||||||||||    
T  52947882 cccctgaaattgtaactttcgtcaaaaacccct 52947850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 1136259 - 1136290
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  1136259 cccctgaaattgtaactttcgtcaaaaacccc 1136290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 49726082 - 49726051
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  49726082 cccctgaaattgtaactttcgtcaaaaacccc 49726051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 52116929 - 52116960
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  52116929 cccctgaaattgtaactttcgtcaaaaacccc 52116960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 52118359 - 52118328
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  52118359 cccctgaaattgtaactttcgtcaaaaacccc 52118328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 52946385 - 52946416
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  52946385 cccctgaaattgtaactttcgtcaaaaacccc 52946416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 31800480 - 31800374
Alignment:
Q  76 cccctgaaattgtaactttcgtca-aaaaccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    |||| ||||||||||||||||||| |||| ||| | |||||||||||||||| |||| | |  | ||||| | |||| ||||||| |||  |||| ||||    
T  31800480 cccccgaaattgtaactttcgtcaaaaaatcccatgatttttaagaaacttctaaaactcctataaaattgtgaaacgttagtcagtta--ccccctccg 31800383  T
Q  175 tttgttttg 183  Q
    |||||||||    
T  31800382 tttgttttg 31800374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 50381934 - 50381986
Alignment:
Q  138 tgaaattatcaaactttagtcaattactccccttccgtttgttttggctgttaa 191  Q
    ||||||| |||||| |||||||||||| |||| || ||||||||||||||||||    
T  50381934 tgaaattgtcaaacgttagtcaattac-ccccctctgtttgttttggctgttaa 50381986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 4592646 - 4592769
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccct-taatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||||||||   || |||||||||||||| |||||||||||| |||||||||    
T  4592646 cccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaacccccatgaaattatcaaacgttagtcaattaccccccttccg 4592745  T
Q  175 tttgttttggctgttaagtgacta 198  Q
    ||||||||||||||||||||||||    
T  4592746 tttgttttggctgttaagtgacta 4592769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 4593519 - 4593399
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaaccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgt 175  Q
    ||||||||| |||| ||||||||||||||||| | ||||||| |||||||||||||   || |||||||  ||||| | ||||||||| ||||| |||||    
T  4593519 cccctgaaaatgtagctttcgtcaaaaaccccctgatttttaggaaacttcaaaaaaccccctgaaattgacaaacgtcagtcaatta-tccccctccgt 4593421  T
Q  176 ttgttttggctgttaagtgact 197  Q
    |||||||||||||||| |||||    
T  4593420 ttgttttggctgttaaatgact 4593399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 22539226 - 22539115
Alignment:
Q  77 ccctgaaattgtaactttcgtcaaaaaccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtt 176  Q
    |||||||||||||||||||||||| |||||| | | |||||| ||||||||||||   || ||||||| |||||| |||||||||||   ||| |||||     
T  22539226 ccctgaaattgtaactttcgtcaagaaccccctgacttttaaaaaacttcaaaaaaccccatgaaattgtcaaacgttagtcaatta---cccctccgta 22539130  T
Q  177 tgttttggctgttaa 191  Q
    |||||||||||||||    
T  22539129 tgttttggctgttaa 22539115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 10255748 - 10255810
Alignment:
Q  135 ccttgaaattatcaaactttagtcaattactccccttccgtttgttttggctgttaagtgacta 198  Q
    ||||||||||||||||| | |||||||||| ||||| |||||||||||||||||||| ||||||    
T  10255748 ccttgaaattatcaaacgtcagtcaattacccccct-ccgtttgttttggctgttaaatgacta 10255810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 33002900 - 33003009
Alignment:
Q  81 gaaattgtaactttcgtcaaaa--accccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttg 178  Q
    ||||||||||||||| | ||||  ||||||| |||||||||||||||||||||  ||  ||||||| |||||| ||||| |||||  |||| ||||||||    
T  33002900 gaaattgtaactttcataaaaaaaaccccttgatttttaagaaacttcaaaaa-ctcgatgaaattgtcaaacgttagttaatta--ccccctccgtttg 33002996  T
Q  179 ttttggctgttaa 191  Q
    |||||| ||||||    
T  33002997 ttttggatgttaa 33003009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 33003831 - 33003741
Alignment:
Q  81 gaaattgtaactttcgtcaaaaacccct-taatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactcccct 170  Q
    ||||||||||||||||| |||||  ||  | ||||||||||||||| ||||||| |||||||||| |||||| || ||||||||| |||||    
T  33003831 gaaattgtaactttcgtaaaaaaaaccgctgatttttaagaaacttaaaaaattcccttgaaattgtcaaacgttggtcaattacccccct 33003741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 45115006 - 45114954
Alignment:
Q  79 ctgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaa 130  Q
    ||||||||||||||||||||||||| |||||| | ||||||||||||||||||    
T  45115006 ctgaaattgtaactttcgtcaaaaacccccttgacttttaagaaacttcaaaa 45114954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 10256601 - 10256485
Alignment:
Q  80 tgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttg 178  Q
    |||||||||| ||||||||||||| |||| | |||| || |||||||||||||   || |||||||  ||||| |||||||||||| |||  ||||||||    
T  10256601 tgaaattgtagctttcgtcaaaaacccccctgatttctaggaaacttcaaaaa-ccccctgaaattgccaaacgttagtcaattac-cccgctccgtttg 10256504  T
Q  179 ttttggctgttaagtgact 197  Q
    |||||||| |||| |||||    
T  10256503 ttttggctattaaatgact 10256485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 5347745 - 5347865
Alignment:
Q  79 ctgaaattgtaactttcgtcaaaaacccct-taatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgttt 177  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||||||||   || |||||||||||||| |||||||||||| ||||||||||||    
T  5347745 ctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttcaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgttt 5347844  T
Q  178 gttttggctgttaagtgacta 198  Q
    |||||||||||||||||||||    
T  5347845 gttttggctgttaagtgacta 5347865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 36429301 - 36429423
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    |||||||||||||||||||||||||||| |||| | |||||||||||||||||||||   || |||||||||||||| | |||||||||| |||| ||||    
T  36429301 cccctgaaattgtaactttcgtcaaaaatccccctgatttttaagaaacttcaaaaacgcccctgaaattatcaaacgtcagtcaattac-ccccctccg 36429399  T
Q  175 tttgttttggctgttaagtgacta 198  Q
    ||||||||||||||||| ||||||    
T  36429400 tttgttttggctgttaaatgacta 36429423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 5348622 - 5348501
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    |||||||||||||| ||||||||||||| |||| | ||||||| |||||||||||||   || |||||||  ||||| |||||||||||| |||| ||||    
T  5348622 cccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaaaccccctgaaattgacaaacgttagtcaattac-ccccctccg 5348524  T
Q  175 tttgttttggctgttaagtgact 197  Q
    ||||||||||||||||| |||||    
T  5348523 tttgttttggctgttaaatgact 5348501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 197
Target Start/End: Original strand, 31808297 - 31808417
Alignment:
Q  77 ccctgaaattgtaactttcgtcaaaaacc-ccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgt 175  Q
    ||||||| |||||||||||||||||||   || | ||||||||||||||||||||| |  | ||||||| | |||| |||||||||||| |||| || ||    
T  31808297 ccctgaatttgtaactttcgtcaaaaatttccctgatttttaagaaacttcaaaaactctcctgaaattgttaaacgttagtcaattac-ccccctcagt 31808395  T
Q  176 ttgttttggctgttaagtgact 197  Q
    |||||||||||||||| |||||    
T  31808396 ttgttttggctgttaaatgact 31808417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 29500817 - 29500700
Alignment:
Q  80 tgaaattgtaactttcgtcaaaaac--cccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgttt 177  Q
    ||||||| ||| |||||||||||||  ||| ||| |||||||||| ||||||||  ||||||||||| |||||| |||||||||||  ||   |||||||    
T  29500817 tgaaattataattttcgtcaaaaactccccataacttttaagaaagttcaaaaaaatccttgaaattgtcaaacgttagtcaatta--ccttctccgttt 29500720  T
Q  178 gttttggctgttaagtgact 197  Q
    ||||||| |||||| |||||    
T  29500719 gttttggttgttaaatgact 29500700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 36681961 - 36681845
Alignment:
Q  80 tgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttg 178  Q
    |||||||||||||||||| ||||| |||| | |||||||| ||||||||||     || ||||||| |||||| |||||||||||| ||||| |||||||    
T  36681961 tgaaattgtaactttcgttaaaaatccccctgatttttaaaaaacttcaaaccc--ccatgaaattgtcaaacgttagtcaattacccccct-ccgtttg 36681865  T
Q  179 ttttggctgttaagtgacta 198  Q
    ||||| ||||||| ||||||    
T  36681864 ttttgactgttaaatgacta 36681845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 10326955 - 10326845
Alignment:
Q  82 aaattgtaactttcgtcaaaaacc-ccttaatttttaagaaactt-caaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttgt 179  Q
    |||||||||||||||||||||||| || | |||||||||||||||  |||||    ||||||||| |||||| |||||||| ||| |||| ||||| |||    
T  10326955 aaattgtaactttcgtcaaaaacctccatgatttttaagaaacttaaaaaaaaaatcttgaaattgtcaaacattagtcaactac-ccccctccgtctgt 10326857  T
Q  180 tttggctgttaa 191  Q
    ||||||||||||    
T  10326856 tttggctgttaa 10326845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 29500028 - 29500150
Alignment:
Q  77 ccctgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttc-cttgaaattatcaaactttagtcaattactccccttccg 174  Q
    |||| ||||| ||||||| || ||||| |||| ||||||||||||||||||| |||  || | | ||||| |||||| |||||||||||| |||  ||||    
T  29500028 ccctcaaattataacttttgttaaaaatccccctaatttttaagaaacttcataaacctctcataaaattgtcaaacgttagtcaattac-ccctctccg 29500126  T
Q  175 tttgttttggctgttaagtgacta 198  Q
    |||||||||||| |||| ||||||    
T  29500127 tttgttttggctcttaaatgacta 29500150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 7491273 - 7491392
Alignment:
Q  82 aaattgtaactttcgtcaaaaacc-ccttaatttttaagaaacttcaaaaattt---ccttgaaattatcaaactttagtcaattactccccttccgttt 177  Q
    |||||||||||||||||||||| | || | | ||||||||||||| |||||      || ||||||| | |||| |||||||||||| ||||||| ||||    
T  7491273 aaattgtaactttcgtcaaaaatcaccctgacttttaagaaacttaaaaaaaaaaacccctgaaattgtgaaacgttagtcaattaccccccttc-gttt 7491371  T
Q  178 gttttggctgttaagtgacta 198  Q
    |||||||||||||| ||||||    
T  7491372 gttttggctgttaaatgacta 7491392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 36430119 - 36430060
Alignment:
Q  138 tgaaattatcaaactttagtcaattactccccttccgtttgttttggctgttaagtgacta 198  Q
    |||||||  ||||| |||||||||||| |||| ||||||||||||||||||||| ||||||    
T  36430119 tgaaattgccaaacgttagtcaattac-ccccatccgtttgttttggctgttaaatgacta 36430060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 38561237 - 38561205
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccct 108  Q
    |||||||||||||||||||||||||||||||||    
T  38561237 cccctgaaattgtaactttcgtcaaaaacccct 38561205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 43492563 - 43492595
Alignment:
Q  77 ccctgaaattgtaactttcgtcaaaaacccctt 109  Q
    |||||||||||||||||||||||||||||||||    
T  43492563 ccctgaaattgtaactttcgtcaaaaacccctt 43492595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 17641811 - 17641780
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  17641811 cccctgaaattgtaactttcgtcaaaaacccc 17641780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 19897411 - 19897442
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  19897411 cccctgaaattgtaactttcgtcaaaaacccc 19897442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 190
Target Start/End: Complemental strand, 33136700 - 33136590
Alignment:
Q  80 tgaaattgtaactttcgtcaaaaacc-ccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttg 178  Q
    ||||| ||||||||| |||||||| | || ||||||||   |||||||||||| | || ||||||| | |||| |||||||||||| |||| ||| | ||    
T  33136700 tgaaagtgtaacttttgtcaaaaaactccctaatttttgcaaaacttcaaaaactcccctgaaattgttaaacgttagtcaattac-ccccctccatctg 33136602  T
Q  179 ttttggctgtta 190  Q
    ||||||||||||    
T  33136601 ttttggctgtta 33136590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 34088594 - 34088625
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  34088594 cccctgaaattgtaactttcgtcaaaaacccc 34088625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 971352 - 971301
Alignment:
Q  79 ctgaaattgtaactttcgtcaaaaaccccttaatttttaagaaacttcaaaaa 131  Q
    |||||||||||| ||||||||||||  |||| |||||||||| ||||||||||    
T  971352 ctgaaattgtaattttcgtcaaaaa-accttgatttttaagagacttcaaaaa 971301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 26626666 - 26626638
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaac 104  Q
    |||||||||||||||||||||||||||||    
T  26626666 cccctgaaattgtaactttcgtcaaaaac 26626638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 38559590 - 38559618
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaac 104  Q
    |||||||||||||||||||||||||||||    
T  38559590 cccctgaaattgtaactttcgtcaaaaac 38559618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 27454935 - 27455057
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    |||||||||||||||||||||||||||| |||| | ||||||||||||||| |||||   | ||||||||||||||| | |||||||||| |||| ||||    
T  27454935 cccctgaaattgtaactttcgtcaaaaacccccctgatttttaagaaacttgaaaaacccctttgaaattatcaaacgtcagtcaattac-ccccctccg 27455033  T
Q  175 tttgttttggctgttaagtgacta 198  Q
    ||||||||||||||||| ||||||    
T  27455034 tttgttttggctgttaaatgacta 27455057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 621652 - 621531
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    |||||||||||||| ||||||||||||| |||| | ||||||| |||||||||||||   || |||||||  ||||| |||||||||||| |||| ||||    
T  621652 cccctgaaattgtagctttcgtcaaaaacccccctgatttttaggaaacttcaaaaacccccctgaaattgacaaacgttagtcaattac-ccccctccg 621554  T
Q  175 tttgttttggctgttaagtgact 197  Q
    ||||||||||||||||| |||||    
T  621553 tttgttttggctgttaaatgact 621531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 11147802 - 11147879
Alignment:
Q  113 ttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttgttttggctgttaa 191  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||||||| |||| |||||||||||||||||||||    
T  11147802 ttttaagaaacttcaaaaattcccttgaaattgtcaaacgttagtcaattac-ccccctccgtttgttttggctgttaa 11147879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 21225819 - 21225938
Alignment:
Q  78 cctgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtt 176  Q
    |||||||||||||||||||||||||| |  ||| ||||||||||||||| |||||   | |||||||| |||||| |||||||||||  |||  ||||||    
T  21225819 cctgaaattgtaactttcgtcaaaaatcttcttgatttttaagaaactttaaaaacacctttgaaattgtcaaaccttagtcaatta--ccctctccgtt 21225916  T
Q  177 tgttttggctgttaagtgacta 198  Q
    ||||||||||||||| ||||||    
T  21225917 tgttttggctgttaaatgacta 21225938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 197
Target Start/End: Original strand, 620492 - 620610
Alignment:
Q  79 ctgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgttt 177  Q
    |||||||||||  |||||||||||| |||| | ||||||| |||||||||||||   || |||||||  ||||| |||||||||||| |||| |||||||    
T  620492 ctgaaattgtagttttcgtcaaaaatccccctgatttttaggaaacttcaaaaacccccctgaaattgacaaacgttagtcaattac-ccccctccgttt 620590  T
Q  178 gttttggctgttaagtgact 197  Q
    |||||||||||||| |||||    
T  620591 gttttggctgttaaatgact 620610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 191
Target Start/End: Complemental strand, 31633726 - 31633614
Alignment:
Q  78 cctgaaattgtaactttcgtcaaaaacccc-ttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtt 176  Q
    |||||||||| || |||||||||||||||| ||||||||||||||||||||||||   || | ||||| |||||| |||||| ||||  |||| ||||||    
T  31633726 cctgaaattggaagtttcgtcaaaaacccccttaatttttaagaaacttcaaaaacccccataaaattgtcaaacattagtccatta--ccccctccgtt 31633629  T
Q  177 tgttttggctgttaa 191  Q
    ||||| |||||||||    
T  31633628 tgtttgggctgttaa 31633614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 49682143 - 49682059
Alignment:
Q  80 tgaaattgtaactttcgtcaaaaacc-ccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattac 164  Q
    ||||||||||||||||||||||||   || ||||||||||||||||||||||| | || |||||||||||| | ||||||||||||    
T  49682143 tgaaattgtaactttcgtcaaaaaattccctaatttttaagaaacttcaaaaa-tcccctgaaattatcaatcgttagtcaattac 49682059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 24963745 - 24963703
Alignment:
Q  14 agaagaaaaagtagtgtgtgttgtcgtatatcacataaatttc 56  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  24963745 agaagaaaaagtagtgtgtgttgtcgcatatcacataaatttc 24963703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 2613650 - 2613681
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  2613650 cccctgaaattgtaactttcgtcaaaaacccc 2613681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 3880873 - 3880904
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  3880873 cccctgaaattgtaactttcgtcaaaaacccc 3880904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 16508238 - 16508207
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  16508238 cccctgaaattgtaactttcgtcaaaaacccc 16508207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 50663014 - 50663045
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  50663014 cccctgaaattgtaactttcgtcaaaaacccc 50663045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 50664517 - 50664486
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  50664517 cccctgaaattgtaactttcgtcaaaaacccc 50664486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 52897809 - 52897778
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  52897809 cccctgaaattgtaactttcgtcaaaaacccc 52897778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 56065246 - 56065215
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  56065246 cccctgaaattgtaactttcgtcaaaaacccc 56065215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 106
Target Start/End: Original strand, 677065 - 677095
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaaccc 106  Q
    |||||||||||||||||||||||||||||||    
T  677065 cccctgaaattgtaactttcgtcaaaaaccc 677095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 31632437 - 31632514
Alignment:
Q  111 atttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttgttttggctgttaa 191  Q
    ||||||||||||||||||||   ||||  ||||| |||||| |||||||||| | |||| ||||||||||| |||||||||    
T  31632437 atttttaagaaacttcaaaaccctcct--aaattgtcaaacgttagtcaattgc-ccccctccgtttgtttgggctgttaa 31632514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 49681288 - 49681402
Alignment:
Q  82 aaattgtaactttcgtcaaaaac-cccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttgtt 180  Q
    |||||||| |||| ||||||||| ||| | |||||||  ||||||||||||   |  ||||||| ||||||  |||| ||||| |||||| |||||||||    
T  49681288 aaattgtagcttttgtcaaaaactcccctgatttttagaaaacttcaaaaacccctctgaaattgtcaaacgctagttaatta-tcccct-ccgtttgtt 49681385  T
Q  181 ttggctgttaagtgact 197  Q
    ||||||||||| |||||    
T  49681386 ttggctgttaaatgact 49681402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 52896329 - 52896357
Alignment:
Q  80 tgaaattgtaactttcgtcaaaaacccct 108  Q
    |||||||||||||||||||||||||||||    
T  52896329 tgaaattgtaactttcgtcaaaaacccct 52896357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 55978494 - 55978522
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaac 104  Q
    |||||||||||||||||||||||||||||    
T  55978494 cccctgaaattgtaactttcgtcaaaaac 55978522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 3987352 - 3987239
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaaccc-cttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    |||||||||||||||||||||||||||| || | | ||||||||||||||| |||||   |||||||||| |||||| |||||||||||  |||| ||||    
T  3987352 cccctgaaattgtaactttcgtcaaaaatcctcctgatttttaagaaacttaaaaaaaaaccttgaaattgtcaaacgttagtcaatta--ccccctccg 3987255  T
Q  175 tttgttttggctgtta 190  Q
    ||||||||||||||||    
T  3987254 tttgttttggctgtta 3987239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 30480808 - 30480689
Alignment:
Q  80 tgaaattgtaactttcgtcaaaaac-cccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttg 178  Q
    |||||||||||||||||| |||||  ||||| |||||||||| |||||||||| | |||||||||| |||||| ||||||||||| ||||| ||||||||    
T  30480808 tgaaattgtaactttcgtaaaaaattcccttgatttttaagatacttcaaaaaatcccttgaaattgtcaaacgttagtcaatta-tccccctccgtttg 30480710  T
Q  179 -ttttggctgttaagtgacta 198  Q
     ||||||||||||| ||||||    
T  30480709 gttttggctgttaaatgacta 30480689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 32391000 - 32390892
Alignment:
Q  81 gaaattgtaactttcgtcaaaaaccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttgtt 180  Q
    ||||||||| | |||||||||| |||| | |  |||||||||||||||||||  ||| ||||||||||||| |||||||||||| |||| ||||||||||    
T  32391000 gaaattgtagcattcgtcaaaacccccctgacatttaagaaacttcaaaaatcccct-gaaattatcaaacgttagtcaattac-ccccctccgtttgtt 32390903  T
Q  181 ttggctgttaa 191  Q
    ||| |||||||    
T  32390902 ttgactgttaa 32390892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 6733042 - 6733141
Alignment:
Q  82 aaattgtaactttcgtcaaaaaccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttgttt 181  Q
    ||||| |||||||||||||||||||| | | |||||| |||||||||||| | || ||||||| | |||| ||||||||||| ||| | |||||||||||    
T  6733042 aaattataactttcgtcaaaaaccccctgacttttaaaaaacttcaaaaactcccatgaaattgttaaacgttagtcaatta-tcctcctccgtttgttt 6733140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 36068220 - 36068113
Alignment:
Q  79 ctgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgttt 177  Q
    ||||||||||| ||||||||||||| |||| | ||||||| |||| ||||||||   || ||||||| |||||  |||||||||||| |||| |||||||    
T  36068220 ctgaaattgtagctttcgtcaaaaaaccccctgatttttaggaaatttcaaaaaaccccctgaaattgtcaaatgttagtcaattac-ccccctccgttt 36068122  T
Q  178 gttttggct 186  Q
    |||||||||    
T  36068121 gttttggct 36068113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 191
Target Start/End: Original strand, 41589203 - 41589315
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaaccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgt 175  Q
    |||||||||||||||||| || |||||||  | ||| ||| |||||| ||||||||   ||| | ||||||||||| |||||||||||  |||| || ||    
T  41589203 cccctgaaattgtaacttccgccaaaaacttcctaactttaaagaaatttcaaaaaaaacctag-aattatcaaacgttagtcaatta--ccccctctgt 41589299  T
Q  176 ttgttttggctgttaa 191  Q
    ||||||||||||||||    
T  41589300 ttgttttggctgttaa 41589315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 36067317 - 36067435
Alignment:
Q  78 cctgaaattgtaactttcgtcaaaa-accccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtt 176  Q
    |||||||||||||||||||||||||  |||| | |||||||||||| || |||||   || ||||| ||| |||| |||||||||||  |||| ||||||    
T  36067317 cctgaaattgtaactttcgtcaaaatcccccctgatttttaagaaattttaaaaaaccccctgaaa-tattaaacattagtcaatta--ccccctccgtt 36067413  T
Q  177 tgttttggctgttaagtgacta 198  Q
    | ||||||| ||||| ||||||    
T  36067414 tattttggccgttaaatgacta 36067435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 6733250 - 6733140
Alignment:
Q  79 ctgaaattgtaactttcgtcaaaaacc-ccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgttt 177  Q
    |||||||||||||||||||||||||   || | ||||||||||||||| |||||   | |||||||| |||||| |||| ||||||| |||||| |||||    
T  6733250 ctgaaattgtaactttcgtcaaaaaaaaccctgatttttaagaaactt-aaaaaaaactttgaaattgtcaaacgttagccaattac-cccctt-cgttt 6733154  T
Q  178 gttttggctgttaa 191  Q
     |||||||||||||    
T  6733153 attttggctgttaa 6733140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 31285489 - 31285520
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  31285489 cccctgaaattgtaactttcgtcaaaaacccc 31285520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 31286961 - 31286930
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  31286961 cccctgaaattgtaactttcgtcaaaaacccc 31286930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 107
Target Start/End: Complemental strand, 35394805 - 35394776
Alignment:
Q  78 cctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||    
T  35394805 cctgaaattgtaactttcgtcaaaaacccc 35394776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 32372 - 32493
Alignment:
Q  78 cctgaaattgtaactttcgtcaaaaacccct-taatttttaagaaacttcaaaaatttcct-tgaaattatcaaactttagtcaattactccccttccgt 175  Q
    |||||||||||||||||||||||||| |||| | |||||||||||||||||||||   |||  ||||||||||||| ||||||||| || |||  |||||    
T  32372 cctgaaattgtaactttcgtcaaaaatccctctgatttttaagaaacttcaaaaaccccctcggaaattatcaaacgttagtcaataac-ccctctccgt 32470  T
Q  176 ttgttttggctgttaagtgacta 198  Q
    |||||||||||||||| ||||||    
T  32471 ttgttttggctgttaaatgacta 32493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 33257 - 33138
Alignment:
Q  80 tgaaattgtaactttcgtcaaaaac-cccttaatttttaagaaacttc-aaaaatttccttgaaattatcaaactttagtcaattactccccttccgttt 177  Q
    |||||||||| ||||||| |||||| ||| | ||||||| |||||||| |||||   || ||||||| |||||| |||||||||||| ||||| ||||||    
T  33257 tgaaattgtagctttcgtaaaaaactcccctgatttttaggaaacttccaaaaacccccctgaaattgtcaaacgttagtcaattacccccct-ccgttt 33159  T
Q  178 gttttggctgttaagtgacta 198  Q
    |||||||||||||| ||||||    
T  33158 gttttggctgttaaatgacta 33138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 78 - 197
Target Start/End: Original strand, 27585312 - 27585429
Alignment:
Q  78 cctgaaattgtaactttcgtcaaaaaccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgttt 177  Q
    |||||||||||| ||||||||||||| |||  ||||||||||||||||||||||   || ||||||| |||||| |||||| ||||| |||| | |||||    
T  27585312 cctgaaattgtacctttcgtcaaaaatcccccaatttttaagaaacttcaaaaa-ccccctgaaattgtcaaacgttagtcgattac-ccccattcgttt 27585409  T
Q  178 gttttggctgttaagtgact 197  Q
    |||||||||||||| |||||    
T  27585410 gttttggctgttaaatgact 27585429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 47445889 - 47445769
Alignment:
Q  79 ctgaaattgtaactttcgtcaaaaa--ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtt 176  Q
    |||||||||||| |||| |||||||  |||| | |||||||||||||||||||||   || |||||||||||||| |||||||||||| |||| ||| ||    
T  47445889 ctgaaattgtaattttcatcaaaaatcccccctgatttttaagaaacttcaaaaaaacccctgaaattatcaaacgttagtcaattac-ccccctccatt 47445791  T
Q  177 tgttttggctgttaagtgacta 198  Q
    |||||||| |||||| ||||||    
T  47445790 tgttttggttgttaaatgacta 47445769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 197
Target Start/End: Complemental strand, 36476085 - 36475966
Alignment:
Q  78 cctgaaattgtaactttcgtcaaaaacccct-taatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtt 176  Q
    ||||||||||||||||||||||||| ||  | ||| |||||||||||||||||||   || ||||||| | |||| |||||||||||| |||| ||| ||    
T  36476085 cctgaaattgtaactttcgtcaaaaccctatctaacttttaagaaacttcaaaaacccccatgaaattgttaaacgttagtcaattac-ccccctccatt 36475987  T
Q  177 tgttttggctgttaagtgact 197  Q
    ||||||||||||||| |||||    
T  36475986 tgttttggctgttaaatgact 36475966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 36475295 - 36475411
Alignment:
Q  80 tgaaattgtaactttcgtcaaaaacc--ccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgttt 177  Q
    |||||||||||||||||||||||| |  || | ||||||||||||||||||||    || ||||||| | |||| |||||||||||  |||| |||||||    
T  36475295 tgaaattgtaactttcgtcaaaaaacttccatgatttttaagaaacttcaaaagaaaccctgaaattgttaaacgttagtcaatta--ccccctccgttt 36475392  T
Q  178 gttttggctgttaagtgac 196  Q
    |||||||||||||| ||||    
T  36475393 gttttggctgttaaatgac 36475411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 191
Target Start/End: Original strand, 47445007 - 47445122
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaa-accccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccg 174  Q
    |||||||||||||| ||||||||||||  |||| | ||||| | |||||||||||||   || ||||||| |||||| |||||||||||| |||| ||||    
T  47445007 cccctgaaattgtagctttcgtcaaaaccccccctgattttcaggaaacttcaaaaacccccatgaaattgtcaaacgttagtcaattac-ccccctccg 47445105  T
Q  175 tttgttttggctgttaa 191  Q
    ||| |||||||||||||    
T  47445106 tttattttggctgttaa 47445122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 26991094 - 26991038
Alignment:
Q  114 tttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactcccct 170  Q
    |||||||||||||||||| |||| | ||||| |||||| ||| ||||||||||||||    
T  26991094 tttaagaaacttcaaaaacttccctaaaattgtcaaacgttaatcaattactcccct 26991038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 11343450 - 11343419
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  11343450 cccctgaaattgtaactttcgtcaaaaacccc 11343419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 11501470 - 11501439
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  11501470 cccctgaaattgtaactttcgtcaaaaacccc 11501439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 14282799 - 14282830
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  14282799 cccctgaaattgtaactttcgtcaaaaacccc 14282830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 14284289 - 14284258
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  14284289 cccctgaaattgtaactttcgtcaaaaacccc 14284258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 191
Target Start/End: Complemental strand, 27586096 - 27585987
Alignment:
Q  80 tgaaattgtaactttcgtcaaaaa--ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgttt 177  Q
    |||||||||||||||||| |||||  |||| | | |||||||||||||||||||  ||| ||||||| | |||| |||||||||||  |||| ||| |||    
T  27586096 tgaaattgtaactttcgttaaaaaatccccat-acttttaagaaacttcaaaaaactcc-tgaaattgttaaacgttagtcaatta--ccccctccattt 27586001  T
Q  178 gttttggctgttaa 191  Q
    ||| ||||||||||    
T  27586000 gttatggctgttaa 27585987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 38482562 - 38482531
Alignment:
Q  76 cccctgaaattgtaactttcgtcaaaaacccc 107  Q
    ||||||||||||||||||||||||||||||||    
T  38482562 cccctgaaattgtaactttcgtcaaaaacccc 38482531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 191
Target Start/End: Original strand, 45575952 - 45576061
Alignment:
Q  80 tgaaattgtaactttcgtcaaaaa-ccccttaatttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaattactccccttccgtttg 178  Q
    |||||||| || |||||||||||| |||| | |||||||| ||||||| |||| | || | ||||| |||||| |||||||||||  |||| ||||||||    
T  45575952 tgaaattgaaagtttcgtcaaaaacccccatgatttttaaaaaacttc-aaaactcccataaaattgtcaaacgttagtcaatta--ccccctccgtttg 45576048  T
Q  179 ttttggctgttaa 191  Q
    ||| |||| ||||    
T  45576049 tttgggctattaa 45576061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 786791 - 786843
Alignment:
Q  111 atttttaagaaacttcaaaaatttccttgaaattatcaaactttagtcaatta 163  Q
    |||||||||||||||||||||   || | |||||||||||| |||||||||||    
T  786791 atttttaagaaacttcaaaaaaccccataaaattatcaaacgttagtcaatta 786843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 42813888 - 42813860
Alignment:
Q  79 ctgaaattgtaactttcgtcaaaaacccc 107  Q
    |||||||||||||||||||||||||||||    
T  42813888 ctgaaattgtaactttcgtcaaaaacccc 42813860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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