View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19609_low_1 (Length: 394)
Name: NF19609_low_1
Description: NF19609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19609_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 148 - 391
Target Start/End: Original strand, 2166172 - 2166415
Alignment:
| Q |
148 |
atggtggtcatctagtctcccataaggcggaggaagacatcgagggttgactcatcttcgatgttgtaatcggcaagggtcatgctgtcttgtagtgacc |
247 |
Q |
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| T |
2166172 |
atggtggtcatctagtctcccataaggcggaggaagacgtcgagggttgactcatcttcgatgttgtaatcggcaagggtcatgctgtcttgtagtgacc |
2166271 |
T |
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| Q |
248 |
taccgccaaacaacagattttgttggtgcacttggaaatcttgcttgtcaacaattctctccttcacactgagtattgtgtctgagctcttaacctccaa |
347 |
Q |
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| T |
2166272 |
taccgccaaacaacagattttgttggtgcacttggaaatcttgcttgtcaacaattctctccttcacactgagtattgtgtctgagctcttaacctccaa |
2166371 |
T |
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| Q |
348 |
gtggattttatttccattctgggccataatgatgatgtccatct |
391 |
Q |
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| T |
2166372 |
gtggattttatttccattctgggccataatgaagatttccatct |
2166415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 2166075 - 2166172
Alignment:
| Q |
19 |
catacagctcaagacaaatactctatgttatcaataatgtatgatatctctctagttataaggagattgtcttcatgacaagggtcacattacacaga |
116 |
Q |
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| T |
2166075 |
catacagctcaagacaaatactctatgttatcaataatgtatgatatctctctagttataaggagattgtcttcatgacaagggtcacattacacaga |
2166172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 7969244 - 7969280
Alignment:
| Q |
67 |
tctctagttataaggagattgtcttcatgacaagggt |
103 |
Q |
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| T |
7969244 |
tctctacttatagggagattgtcttcatgacaagggt |
7969280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 37577880 - 37577819
Alignment:
| Q |
43 |
atgttatcaataatgtatgatatctctctagttataaggagattgtcttcatgacaagggtcac |
106 |
Q |
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| T |
37577880 |
atgttatcaataatgtatgacttctca--acttatatggtgattgtcttcatgacaagggtcac |
37577819 |
T |
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