View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19609_low_5 (Length: 239)
Name: NF19609_low_5
Description: NF19609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19609_low_5 |
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| [»] chr6 (13 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 6525673 - 6525906
Alignment:
| Q |
6 |
aactttcttatcttctgcagtgcactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaacaccatccctttttaaag |
105 |
Q |
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| T |
6525673 |
aactttcttatcttctgctgtgcactttcattatcataaatcccttgcaaggcataaacaaaccccttccaaccctcttcaacaccatccctttttaaag |
6525772 |
T |
|
| Q |
106 |
catgtaatgtccactccacaagttccttcacatacttcgcatcagagaataagacttcagaaataggaagcaatggtaagagctgaatcccaagcctaca |
205 |
Q |
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| T |
6525773 |
caggtaatgtccactccacaagtcccttcacatacataacatcagagaacaagacttcagaaattggaagcaatggtaagagctgaatcccaagcctaca |
6525872 |
T |
|
| Q |
206 |
ttctttccactcggctggaccaaatcataaacca |
239 |
Q |
| |
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||||||||| || ||||||||||| ||||||||| |
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| T |
6525873 |
ttctttccattcagctggaccaaaccataaacca |
6525906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 6464639 - 6464843
Alignment:
| Q |
10 |
ttcttatcttctgcagtgcactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaacaccatccctttttaaagcatg |
109 |
Q |
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| T |
6464639 |
ttcttatcttcttcaatccactttcattatcataaactccttccaaggcatagacaaaccctttccatccttctccaacaccttccctattcaaagcagg |
6464738 |
T |
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| Q |
110 |
taatgtccactccacaagttccttcacatacttcgcatcagagaataagacttcagaaataggaagcaatggtaagagctgaatcccaagcctacattct |
209 |
Q |
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| T |
6464739 |
caatgtccactccacaagttccttcacaaaatcaacatttgaaaataagaattcagaaattggaagcaatggtaagagctgaatcccaagcctacattct |
6464838 |
T |
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| Q |
210 |
ttcca |
214 |
Q |
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||||| |
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| T |
6464839 |
ttcca |
6464843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 6495970 - 6496180
Alignment:
| Q |
1 |
cttttaactttcttatcttctgcagtgcactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaacaccatccctttt |
100 |
Q |
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||||||| |||||||| |||| || |||| |||| ||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||| ||||| |
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| T |
6495970 |
cttttaaatttcttatattcttcaatgcattttccttatcataaattccttgtaaggcatatacaaaccctttccatccttcttcaacaccatctctttt |
6496069 |
T |
|
| Q |
101 |
taaagcatgtaatgtccactccacaagttccttcacatacttcg-catcagagaataagacttcagaaataggaagcaatggtaagagctgaatcccaag |
199 |
Q |
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| T |
6496070 |
caaagcaggcaatgcccattcaacaagttgcttcacata-ttcgacatcagagaacaatacttcagaaataggaagcaatggtaagagctgaactccaac |
6496168 |
T |
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| Q |
200 |
cctacattcttt |
211 |
Q |
| |
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|||||||||||| |
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| T |
6496169 |
cctacattcttt |
6496180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 6462702 - 6462494
Alignment:
| Q |
1 |
cttttaactttcttatcttctgcagtgcactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaacaccatccctttt |
100 |
Q |
| |
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||||||| |||||||| |||| || |||| |||| |||||||||||||||||||| |||||||||||||| ||||| || ||| |||||||||| ||||| |
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| T |
6462702 |
cttttaaatttcttatattcttcaatgcagtttccttatcataaattccttgtaaagcatatacaaaccctttccatccttcttcaacaccatctctttt |
6462603 |
T |
|
| Q |
101 |
taaagcatgtaatgtccactccacaagttccttcacatacttcgcatcagagaataagacttcagaaataggaagcaatggtaagagctgaatcccaagc |
200 |
Q |
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|||||| | |||||||| || ||||||| ||||||||| | |||||||||| || |||||||||||||||| |||||||||||||||||| ||||| |
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| T |
6462602 |
caaagcaggcaatgtccattcaacaagttgcttcacatattcaacatcagagaacaatacttcagaaataggaaccaatggtaagagctgaattccaagt |
6462503 |
T |
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| Q |
201 |
ctacattct |
209 |
Q |
| |
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||||||||| |
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| T |
6462502 |
ctacattct |
6462494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 6473897 - 6473711
Alignment:
| Q |
28 |
cactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaacaccatccctttttaaagcatgtaatgtccactccacaag |
127 |
Q |
| |
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||||||||||||||||||||||||| || ||||| ||||| || ||||| || ||| ||||||| ||||| ||||||||| | ||||||||||||||||| |
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| T |
6473897 |
cactttcattatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaacaccttccctatttaaagcaagcaatgtccactccacaag |
6473798 |
T |
|
| Q |
128 |
ttccttcacatacttcgcatcagagaataagacttcagaaataggaagcaatggtaagagctgaatcccaagcctacattctttcca |
214 |
Q |
| |
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|||||||||||| | |||| || || || |||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |
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| T |
6473797 |
ttccttcacataatcaacatctgaaaacaaaacttcagaaataggaatcaatggtaggagctgaattccaagcctacattctttcca |
6473711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 76 - 239
Target Start/End: Complemental strand, 1842561 - 1842397
Alignment:
| Q |
76 |
aaccctctccaacaccatccctttttaaagcatgt-aatgtccactccacaagttccttcacatacttcgcatcagagaataagacttcagaaataggaa |
174 |
Q |
| |
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|||||||||||||||||||||||| ||||| | | |||||||||||||||||| ||||||||||||| |||||||| | || | |||||||||||| | |
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| T |
1842561 |
aaccctctccaacaccatccctttctaaagaaaggcaatgtccactccacaagtcccttcacatacttaacatcagaggacaaaatttcagaaataggga |
1842462 |
T |
|
| Q |
175 |
gcaatggtaagagctgaatcccaagcctacattctttccactcggctggaccaaatcataaacca |
239 |
Q |
| |
|
| | ||||||||||||||| || |||| ||||||||||||||| || |||||||| |||| |||| |
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| T |
1842461 |
gtagtggtaagagctgaatgccgagccaacattctttccactcagcaggaccaaaccatagacca |
1842397 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 6504783 - 6504969
Alignment:
| Q |
10 |
ttcttatcttctgcagtgcactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaacacca---tccctttttaaagc |
106 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||||| || | ||||| || |||||||| || |||||||||||| ||||| || ||||| |
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| T |
6504783 |
ttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatcccttccatccttctccaacaccaccttccctattcaaagc |
6504882 |
T |
|
| Q |
107 |
atgtaatgtccactccacaagttccttcacatacttcgcatcagagaataagacttcagaaataggaagcaatggtaagagctgaat |
193 |
Q |
| |
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| | ||||||||||| ||||| || || ||||| | ||||||| || || |||||||||||||| |||||||| |||||||| |
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| T |
6504883 |
aggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaataggagccaatggtataagctgaat |
6504969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 6527573 - 6527661
Alignment:
| Q |
84 |
ccaacaccatccctttttaaagcatgtaatgtccactccacaagttccttcacatacttcgcatcagagaataagacttcagaaatagg |
172 |
Q |
| |
|
|||| ||| ||||||||||| ||| |||||||||| || || ||||||||||||||||| |||||||| || || |||||||||||||| |
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| T |
6527573 |
ccaataccttccctttttaaggcaggtaatgtccattcaactagttccttcacatactttgcatcagaaaacaaaacttcagaaatagg |
6527661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 1832453 - 1832373
Alignment:
| Q |
159 |
acttcagaaataggaagcaatggtaagagctgaatcccaagcctacattctttccactcggctggaccaaatcataaacca |
239 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||||| || |||| ||||||||||||||| || |||||||| |||| |||| |
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| T |
1832453 |
acttaagagataggaagaaatggtaagagctgaatgccgagccgacattctttccactcagcaggaccaaaccatagacca |
1832373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 1846241 - 1846170
Alignment:
| Q |
72 |
ttccaaccctctccaacaccat-ccctttttaaagcatgtaatgtccactccacaagttccttcacatactt |
142 |
Q |
| |
|
||||||||||||||| |||| | ||||||| |||||| |||||||| ||||||||||| ||||||||||||| |
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| T |
1846241 |
ttccaaccctctccatcaccgttcccttttcaaagcaagtaatgtcgactccacaagtcccttcacatactt |
1846170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 1846084 - 1846158
Alignment:
| Q |
160 |
cttcagaaataggaagcaatggtaagagctgaatcccaagcctacattctttccactcggctggaccaaatcata |
234 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||| ||||||| ||||||||||||||| || |||||||| |||| |
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| T |
1846084 |
cttcagaaataggaaaaaatggcaagagctcaatgccaagccgacattctttccactctgcaggaccaaaccata |
1846158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 1847085 - 1847024
Alignment:
| Q |
173 |
aagcaatggtaagagctgaatcccaagcctacattctttccactcggctggaccaaatcata |
234 |
Q |
| |
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||||||||||||||||||||| || |||| |||||||||||||| || |||||||| |||| |
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|
| T |
1847085 |
aagcaatggtaagagctgaattccgagccgacattctttccactgagccggaccaaaccata |
1847024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 6516985 - 6516944
Alignment:
| Q |
10 |
ttcttatcttctgcagtgcactttcattatcataaattcctt |
51 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
6516985 |
ttcttatcttcttcaatgcactttcattatcataaattcctt |
6516944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 46382872 - 46382955
Alignment:
| Q |
156 |
aagacttcagaaataggaagcaatggtaagagctgaatcccaagcctacattctttccactcggctggaccaaatcataaacca |
239 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||| ||||||||||| |||| |||| |
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| T |
46382872 |
aagacttcagaaataggaaacaatggtaagagctgaatcccaaggctacgttccttccacttagctggaccaaaccatagacca |
46382955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 9666187 - 9666103
Alignment:
| Q |
3 |
tttaactttcttatcttctgcagtgcactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaa |
87 |
Q |
| |
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||||||||||||||||||| || |||| || |||||||||||||| || || ||||| | ||| ||||||||||| ||||||| |
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| T |
9666187 |
tttaactttcttatcttctccaaagcaccatccttatcataaattccctgcaaagcatacaaaaaacccttccaaccttctccaa |
9666103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 13537211 - 13537127
Alignment:
| Q |
3 |
tttaactttcttatcttctgcagtgcactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaa |
87 |
Q |
| |
|
||||||||||||||||||| || |||| || |||||||||||||| || || ||||| | ||| ||||||||||| ||||||| |
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|
| T |
13537211 |
tttaactttcttatcttctccaaagcaccatccttatcataaattccctgcaaagcatacaaaaaacccttccaaccttctccaa |
13537127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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