View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1960_low_1 (Length: 570)
Name: NF1960_low_1
Description: NF1960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1960_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 317 - 555
Target Start/End: Original strand, 34420737 - 34420982
Alignment:
| Q |
317 |
ttgtgatatcaacata--aaaacataaaaagcctgcaaccattaagtagatgaaatggaccaaaacattagacagaca-----cgacacatacatagtct |
409 |
Q |
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| T |
34420737 |
ttgtgatatcaacatataaaaacataaaaagcctgcaaccattaaatagatgaaatagaccaaaacattagacagacacgacacgacacatacatactct |
34420836 |
T |
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| Q |
410 |
ttttactcgtaaacaaaatgttgagccacttttaaacttgattttgtttggaatttgatcaagagatttactggcataaacactgcaatattgcataatt |
509 |
Q |
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| T |
34420837 |
ttttactcgtaaacaaaatgttgagccacttttaaacttgattttgtttggaatttgatcaagagatttactggcataaacactgcaatattgcataatt |
34420936 |
T |
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| Q |
510 |
attttgaacaatatttattatagaaacttgtttcaaaaataaattt |
555 |
Q |
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| T |
34420937 |
attttgaacaatatttattatagaaacttgtttaaaaaataaattt |
34420982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 34420273 - 34420497
Alignment:
| Q |
11 |
cacagattttgaagccaaagccaaacaaggccttttacatccaacaactttcccttccttt-gcataagtccaaatggacaagaaacactcaaatcatct |
109 |
Q |
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| T |
34420273 |
cacagattttgaagccaaagccaaacaagcccttttacatccaacaactttcccttccttttgcacaagtccaaatggacaagaaacactcaaatcatct |
34420372 |
T |
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| Q |
110 |
tcataactagcaacaccacaacctacaccaccacttactaaactagtcacacatatacaatgatatttatacttgcaaaacaagtaaaacagttacttgt |
209 |
Q |
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| T |
34420373 |
tcataactagcaacaccacaacctacaccaccacttactaaactagtcacacatatacaatgatatttatacttgcaaaacaagt-aaacagttacttgt |
34420471 |
T |
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| Q |
210 |
tacacaagtcaaatagtttcaactaa |
235 |
Q |
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| T |
34420472 |
tacacaagtcaactagttccaactaa |
34420497 |
T |
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