View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1960_low_2 (Length: 476)
Name: NF1960_low_2
Description: NF1960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1960_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 44525617 - 44525271
Alignment:
| Q |
18 |
gttccgatgatgttggtattctcaaacgccaccgtatcatcatcttcttctagttgtaacaccgaaactccaccttcgaataccaaactttctagcttta |
117 |
Q |
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| T |
44525617 |
gttccgatgatgttggtattctcaaacgccaccgtatcatcatcttcttctagttgtaacaccgaaactccaccttcgaataccaaactttctagcttta |
44525518 |
T |
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| Q |
118 |
gctcagcttcttcagaaacggcattcttaagtaaaacactgaaatccgaattgcctcacattgtacaagctggtgacccagttcttcacgagccggcacg |
217 |
Q |
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| T |
44525517 |
gctcagcttcttcagaaacggcattcttaagtaaaacactgaaatccgaattgcctcacattgtacaagctggtgacccagttcttcacgagccggcacg |
44525418 |
T |
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| Q |
218 |
tgaagttgatcacagtgagattaattcagacaagattcagaagattatcgatgacatgattcttgtcatgagaaatgctcctggaattagtctttctgct |
317 |
Q |
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| T |
44525417 |
tgaagttgatcacagtgagattaattcagacaagattcagaagattatcgatggcatgattcttgtcatgagaaatgctcctggaattagtctttctgct |
44525318 |
T |
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| Q |
318 |
caaaaaattggtatccccttaagggtatgtatgaatcaatatttcat |
364 |
Q |
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| T |
44525317 |
caaaaaattggtatccccttaagggtatgtatgaatcaatatttcat |
44525271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 166 - 346
Target Start/End: Complemental strand, 44530257 - 44530077
Alignment:
| Q |
166 |
aattgcctcacattgtacaagctggtgacccagttcttcacgagccggcacgtgaagttgatcacagtgagattaattcagacaagattcagaagattat |
265 |
Q |
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|||||||| |||||||| |||| ||||| |||||| |||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
44530257 |
aattgccttacattgtaaaagcaggtgatccagttattcatgagcctgcacgtgaggttgatcacagtgagattaaatcagacaagattcagaatattat |
44530158 |
T |
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| Q |
266 |
cgatgacatgattcttgtcatgagaaatgctcctggaattagtctttctgctcaaaaaattggtatccccttaagggtatg |
346 |
Q |
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| T |
44530157 |
tgatgatatgattcttgtcatgagaaaagcccctggagtaggtgttgctgccccacaaattggtatccccttaagggtatg |
44530077 |
T |
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