View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1960_low_3 (Length: 420)

Name: NF1960_low_3
Description: NF1960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1960_low_3
NF1960_low_3
[»] scaffold0341 (2 HSPs)
scaffold0341 (14-404)||(623-1013)
scaffold0341 (14-404)||(8276-8666)
[»] chr1 (10 HSPs)
chr1 (14-404)||(6506598-6506988)
chr1 (14-366)||(6521747-6522093)
chr1 (140-363)||(6516945-6517168)
chr1 (140-363)||(6512546-6512769)
chr1 (14-99)||(47778065-47778150)
chr1 (15-87)||(6517215-6517287)
chr1 (14-75)||(6523749-6523810)
chr1 (14-75)||(47781973-47782034)
chr1 (14-99)||(47788187-47788272)
chr1 (259-300)||(47759914-47759955)
[»] chr7 (1 HSPs)
chr7 (14-51)||(722268-722305)


Alignment Details
Target: scaffold0341 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 1013 - 623
Alignment:
Q  14 gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatgga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1013 gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgccatgattgcatgga 914  T
Q  114 atttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  913 atttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtga 814  T
Q  214 ccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgt 313  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  813 ccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgt 714  T
Q  314 gatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgtt 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  713 gatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgtt 623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 8666 - 8276
Alignment:
Q  14 gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatgga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8666 gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgccatgattgcatgga 8567  T
Q  114 atttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8566 atttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtga 8467  T
Q  214 ccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgt 313  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8466 ccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgt 8367  T
Q  314 gatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgtt 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8366 gatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgtt 8276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 6506988 - 6506598
Alignment:
Q  14 gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatgga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6506988 gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgccatgattgcatgga 6506889  T
Q  114 atttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6506888 atttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtga 6506789  T
Q  214 ccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgt 313  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6506788 ccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgt 6506689  T
Q  314 gatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgtt 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6506688 gatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgtt 6506598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 14 - 366
Target Start/End: Original strand, 6521747 - 6522093
Alignment:
Q  14 gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatgga 113  Q
    |||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||||||||||| |||| ||||| ||||||||     |||  ||||    
T  6521747 gaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttgtttgga 6521846  T
Q  114 atttgcagaacgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtga 213  Q
    ||    | ||||||||||| || ||      ||| ||| | |||| | ||||   ||| ||| ||| ||||| ||||| ||||||||| ||||| |||||    
T  6521847 atacaaacaacgcaacaaatgaggt------tgagtttaacaaagtggtgaatttttttttggatagtttaagaaatagagctgcatcaggggacagtga 6521940  T
Q  214 ccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgt 313  Q
    |||||||||||||||||||| ||||| | ||||||||| |||||| |||||||||| || |||||||||||||||||||||||||||| ||||||| |||    
T  6521941 ccttaaatatgctgtaggaagtgatgaggttggtccaagtaataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacattatgt 6522040  T
Q  314 gatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatag 366  Q
    ||||| ||||||| | ||||||||||||||||  ||||||||||| |||||||    
T  6522041 gatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaatag 6522093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 140 - 363
Target Start/End: Complemental strand, 6517168 - 6516945
Alignment:
Q  140 gaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgtaggaaatgatg 239  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||    
T  6517168 gaagatgaatttgataaagtgcggaaaaatttgttggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatg 6517069  T
Q  240 tgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaa 339  Q
     | ||||||||||||||||||||||||||| || ||| | |||||||||||||||||||| | ||||||| |||||||| ||||||| | ||||||||||    
T  6517068 aggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtttaaaacattttgtgatgattgtttggttcaatctatcaa 6516969  T
Q  340 agaaatcccaaattgttgtgacaa 363  Q
     |||||| |||  |||||| ||||    
T  6516968 tgaaatcgcaatatgttgtaacaa 6516945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 140 - 363
Target Start/End: Complemental strand, 6512769 - 6512546
Alignment:
Q  140 gaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgtaggaaatgatg 239  Q
    |||||||||||||||||||  ||||||||||| ||| ||||||||| ||||| |||| |||| || || |||||||||||||||||||| |||| |||||    
T  6512769 gaagatgaatttgataaagtactgaaaaatttattggataatttaagaaatagagcttcatcaggtgatagtgaccttaaatatgctgttggaagtgatg 6512670  T
Q  240 tgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaa 339  Q
     | |||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||  |||||||||||    
T  6512669 aggttggtcaaaataataatcaaactatatatgctcttgttcaatgcacacctgatttgtctaaatcattgtgcgatgattgtttggtaaaatctatcaa 6512570  T
Q  340 agaaatcccaaattgttgtgacaa 363  Q
    || ||||||||  |||||| ||||    
T  6512569 agcaatcccaagatgttgtaacaa 6512546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 47778065 - 47778150
Alignment:
Q  14 gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgc 99  Q
    ||||||||||| |||||||| |||||||||||||||||||||| |||| |||||||||||||| |  |||||||||| ||||||||    
T  47778065 gaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatatttagcctcaatgaaattggacctgc 47778150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 6517287 - 6517215
Alignment:
Q  15 aagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatga 87  Q
    |||||||||| |||||||| ||||| | |||||||||||||| ||||  |||||||||||||||| || ||||    
T  6517287 aagcaattggttggtacgatgatgatagatgcatgttgcgttactcaagccgttcaatatttggtctctatga 6517215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 6523749 - 6523810
Alignment:
Q  14 gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatt 75  Q
    ||||||||||| ||||| || ||||||||||||||||||||||  ||| ||||||| |||||    
T  6523749 gaagcaattggttggtatgaagatgaaaaatgcatgttgcgttattcagaccgttccatatt 6523810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 47781973 - 47782034
Alignment:
Q  14 gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatt 75  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||  ||| ||||||| |||||    
T  47781973 gaagcaattggatggtacgaggatgagaaatgcatgttacgttattcagaccgttctatatt 47782034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 47788187 - 47788272
Alignment:
Q  14 gaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgc 99  Q
    |||||||||||||||||||| ||||| ||||| ||||| ||||  ||| ||||||||||| | ||| | || ||||| ||||||||    
T  47788187 gaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgc 47788272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 47759955 - 47759914
Alignment:
Q  259 tcaaaccatatttgctcttgttcaatgcacacctgatttgtc 300  Q
    ||||||||||| || ||||||||| |||||||||||||||||    
T  47759955 tcaaaccatatatggtcttgttcagtgcacacctgatttgtc 47759914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 722268 - 722305
Alignment:
Q  14 gaagcaattggatggtacgacgatgaaaaatgcatgtt 51  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  722268 gaagcaattggattgtacgatgatgaaaaatgcatgtt 722305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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