View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1960_low_5 (Length: 287)
Name: NF1960_low_5
Description: NF1960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1960_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 7201685 - 7201418
Alignment:
| Q |
1 |
caaaggggagaagggcaattctctttgaaaacacacacaaagccaacccagtaaatcatccattttcaacacacaaacccnnnnnnntcttctctgcaac |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7201685 |
caaaagggagaagggcaattctctttgaaaacacacacaaagccaacccagtaaatcatccattttcaacacacaaacccaaaaaaatcttctctgcaac |
7201586 |
T |
|
| Q |
101 |
atccacattatcaaacaaatctgagaaagagaccttgtagcgcgattgacaagattcttccacttgcatttacattgttctggactctctcatcttggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7201585 |
atccacattatcaaacaaatctgagaaagagaccttgtagcg--attgacaagattcttccacttgcatttacattgttctggactctctcatcttggaa |
7201488 |
T |
|
| Q |
201 |
ctcgccactttccaaagtgacttgttcctcttcgaagcagtaaaattcctcgccacaatttgatcttaga |
270 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7201487 |
ctcgccactttccaaagtgacttgttcctctttgaagcagtaaaattcctcgccacaatttgatcttaga |
7201418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 7194786 - 7194753
Alignment:
| Q |
168 |
atttacattgttctggactctctcatcttggaac |
201 |
Q |
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| T |
7194786 |
atttacattgttctggactctctcatcttggaac |
7194753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 10916079 - 10916141
Alignment:
| Q |
189 |
ctcatcttggaactcgccactttccaaagtgacttgttcctcttcgaagcagtaaaattcctc |
251 |
Q |
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| T |
10916079 |
ctcatcttcgaactcaccacttcccaaagcgtcttgttcctcttcgaagcagtaaaatccctc |
10916141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 10916015 - 10916060
Alignment:
| Q |
142 |
gcgattgacaagattcttccacttgcatttacattgttctggactc |
187 |
Q |
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|||||| |||||||||||||||||||||||||| ||||| |||||| |
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| T |
10916015 |
gcgattaacaagattcttccacttgcatttacactgttcaggactc |
10916060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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