View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1960_low_6 (Length: 278)
Name: NF1960_low_6
Description: NF1960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1960_low_6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 55 - 278
Target Start/End: Original strand, 7017615 - 7017836
Alignment:
| Q |
55 |
aatttaagcttgcattgagatgatgactccaacttctcataattgactttagtattttttaatttacgtgtgcatcatgcatgtgtctagttttttattt |
154 |
Q |
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| T |
7017615 |
aatttaagcttgcattgagatgatgactccaacttctcataattgactttagtattttttaatttacgtgtgcatcatg----tgtctagttttttattt |
7017710 |
T |
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| Q |
155 |
aataataaaaattactaaaattaaaagatactttctccttctccttatgatattagatcttgcttactacaacactaaacaact--acacgttcgagttt |
252 |
Q |
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| T |
7017711 |
aataataaaaattactaaaatttaaagatactttctccttctccttatgatattagatcttgcttactacaacactaaacaactacacacgttcgagttt |
7017810 |
T |
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| Q |
253 |
caattcaatcattccacattttatat |
278 |
Q |
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| T |
7017811 |
caactcaatcattctacattttatat |
7017836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 7043798 - 7043879
Alignment:
| Q |
161 |
aaaaattactaaaattaaaagatactttctccttctccttatgatattagatcttgcttactacaacactaaacaactacac |
242 |
Q |
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| T |
7043798 |
aaaaattattaaaattaaaaggtgctttctccttctcattgtaatattagatcttgcttactacaacactaagcaactacac |
7043879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 7044013 - 7044056
Alignment:
| Q |
235 |
aactacacgttcgagtttcaattcaatcattccacattttatat |
278 |
Q |
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| T |
7044013 |
aactacatgttcaagtttcaactcaatcattccacattttatat |
7044056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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