View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1960_low_8 (Length: 218)
Name: NF1960_low_8
Description: NF1960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1960_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 37178189 - 37178048
Alignment:
| Q |
14 |
agaaaatgggggaatcaggggaggctggtatgtcaatttccaactattcaaatcaagtggttaggcagaatacatttaaagaaagtatccgtggagaaag |
113 |
Q |
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| T |
37178189 |
agaagatgggggaatcaggggaggctggtatgtcaatttccaactattcaaatcaagtggttaggcagaatacatttaaagaaagtatccgtggagaaag |
37178090 |
T |
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| Q |
114 |
ggagcctaattatgacaattttgtttcaaggtctggatgttc |
155 |
Q |
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| T |
37178089 |
ggagcctaattatgacaattttgtttcaaggtctggatgttc |
37178048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 37173525 - 37173475
Alignment:
| Q |
150 |
atgttcatccccgtctttgtcttcctggctcaaactgactgacttggttgc |
200 |
Q |
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| T |
37173525 |
atgttcatccccatctttgtcttcctggctcaaactgactgacttggttgc |
37173475 |
T |
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