View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1960_low_9 (Length: 209)
Name: NF1960_low_9
Description: NF1960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1960_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 36170486 - 36170663
Alignment:
| Q |
18 |
taggaacgtaccgttacactcgtgagttcgagactcgccattttacgttggaagttccatgaaacaccatcaacgttaaatattccattaccaagaagat |
117 |
Q |
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| T |
36170486 |
taggaacgtaccgttacacttgtgagttcaagacttgccattttacgttgaaagttccatgaaacaccgtcaacgttaaatattccattaccaagaagat |
36170585 |
T |
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| Q |
118 |
caccaaggattgtagagaatggttttccttttgggtagttatcaaaacgggttttgagcatgtgttctatgttttgtg |
195 |
Q |
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| T |
36170586 |
caccaaggattgtagagaatggttttccttttgggtagttatcaaaacgggttttgagcatgtgttctatgttttgtg |
36170663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 37672032 - 37672138
Alignment:
| Q |
18 |
taggaacgtaccgttacactcgtgagttcgagactcgccattttacgttggaagttccatgaaacaccatcaacgttaaatattccattaccaagaagat |
117 |
Q |
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|||||||||||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
37672032 |
taggaacgtaccgttacacttgtgagttctaggcttgccattttacgttggaagttccatgaaacaccatcaacgttaaatattccatcatcaagaagat |
37672131 |
T |
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| Q |
118 |
caccaag |
124 |
Q |
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||||||| |
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| T |
37672132 |
caccaag |
37672138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 37672230 - 37672155
Alignment:
| Q |
124 |
ggattgtagagaat----ggttttccttttgggtagttatcaaaacgggttttgagcatgtgttctatgttttgtg |
195 |
Q |
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| T |
37672230 |
ggattgtagagaatggttggttttccttttggattgttatccaaacaggttttgagcatgtgttctatgttttgtg |
37672155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 19931897 - 19931851
Alignment:
| Q |
108 |
ccaagaagatcaccaaggattgtagagaatggttttccttttgggta |
154 |
Q |
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| T |
19931897 |
ccaagaagatcaccaaggattgtagagaattgtttacctttagggta |
19931851 |
T |
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