View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19611_low_3 (Length: 316)

Name: NF19611_low_3
Description: NF19611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19611_low_3
NF19611_low_3
[»] chr7 (1 HSPs)
chr7 (1-298)||(34822078-34822371)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 34822371 - 34822078
Alignment:
Q  1 tttggaccctaccatgtgcttgtctttaacattgctacgagataacgactggggaatatcactccatttatatctattgctttctgttaagataaaaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34822371 tttggaccctaccatgtgcttgtctttaacattgctacgagataacgactggggaatatcactccatttatatctattgctttctgttaagataaaaaga 34822272  T
Q  101 cctcatgtcataatcgtatgcattaaaataaagatactacaacgaaaaagggagaaaaagctagacaaagaagataatttaaggattatttattttgaca 200  Q
    |||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34822271 cctcatatcataatcgtatgccttaaaaaaaagatactacaacgaaaaagggagaaaaagctagacaaagaagataatttaaggattgtttattttgaca 34822172  T
Q  201 atatatataaatatcgaagtaatcgtcaattttgaaccgataggggtggggaggggaatgagtttctcaccgcttctttttacctaaggagaagttaa 298  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  34822171 ata--tataaatatcgaagtaatcgtcaattttgaaccgataggggtggggaggggaatgagtttctcaccgcttc--tttacctaaggagaagttaa 34822078  T

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