View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19611_low_4 (Length: 278)

Name: NF19611_low_4
Description: NF19611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19611_low_4
NF19611_low_4
[»] scaffold0287 (1 HSPs)
scaffold0287 (1-260)||(10011-10275)
[»] chr7 (3 HSPs)
chr7 (1-260)||(3635810-3636074)
chr7 (119-152)||(23918915-23918948)
chr7 (162-195)||(34672906-34672939)
[»] chr2 (5 HSPs)
chr2 (116-149)||(6988076-6988109)
chr2 (119-149)||(34339867-34339897)
chr2 (119-148)||(3423847-3423876)
chr2 (162-195)||(41702342-41702375)
chr2 (119-147)||(10646368-10646396)
[»] chr8 (2 HSPs)
chr8 (163-201)||(6526382-6526420)
chr8 (119-153)||(34770849-34770883)
[»] chr5 (3 HSPs)
chr5 (119-149)||(38047934-38047964)
chr5 (120-149)||(32969197-32969226)
chr5 (162-195)||(42573936-42573969)
[»] chr4 (5 HSPs)
chr4 (119-149)||(4071843-4071873)
chr4 (119-149)||(11917520-11917550)
chr4 (119-152)||(32724077-32724110)
chr4 (162-195)||(52333386-52333419)
chr4 (155-195)||(54214895-54214935)
[»] chr3 (6 HSPs)
chr3 (119-149)||(1395632-1395662)
chr3 (119-149)||(25195385-25195415)
chr3 (119-149)||(32555060-32555090)
chr3 (120-149)||(23530265-23530294)
chr3 (117-149)||(11613460-11613492)
chr3 (153-201)||(27896330-27896378)
[»] chr1 (4 HSPs)
chr1 (119-149)||(28467386-28467416)
chr1 (162-195)||(4920907-4920940)
chr1 (162-195)||(34619519-34619552)
chr1 (119-147)||(45234160-45234188)
[»] scaffold0085 (1 HSPs)
scaffold0085 (119-147)||(34076-34104)
[»] chr6 (1 HSPs)
chr6 (119-147)||(27595646-27595674)


Alignment Details
Target: scaffold0287 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 10011 - 10275
Alignment:
Q  1 aaagcaatgatgcaacatactaacaatacaggaacagcagaatgcatagatgaagtcaccatttggtgtattgttcttaccctgatttttatacaacagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10011 aaagcaatgatgcaacatactaacaatacaggaacagcagaatgcatagatgaagtcaccatttggtgtattgttcttaccttgatttttatacaacagg 10110  T
Q  101 ttgttcctagcaacttaagaaaataatttgactttattttatcttttgtaatgcatatatcctataagctggaaattaagctgtttatccaaacaaagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10111 ttgttcctagcaacttaagaaaataatttgactttattttatcttttgtaatgcatatatcctataagctggaaattaagctgtttatccaaacaaagcc 10210  T
Q  201 tcaaattcccaattattattaaca-----aaacaaaaatttaatctttagaaacaggggttaaga 260  Q
    ||||||||||||||||||||||||     ||||||||| |||||||||||||| |||||||||||    
T  10211 tcaaattcccaattattattaacaaaacaaaacaaaaacttaatctttagaaaaaggggttaaga 10275  T

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Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 3636074 - 3635810
Alignment:
Q  1 aaagcaatgatgcaacatactaacaatacaggaacagcagaatgcatagatgaagtcaccatttggtgtattgttcttaccctgatttttatacaacagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3636074 aaagcaatgatgcaacatactaacaatacaggaacagcagaatgcatagatgaagtcaccatttggtgtattgttcttaccttgatttttatacaacagg 3635975  T
Q  101 ttgttcctagcaacttaagaaaataatttgactttattttatcttttgtaatgcatatatcctataagctggaaattaagctgtttatccaaacaaagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3635974 ttgttcctagcaacttaagaaaataatttgactttattttatcttttgtaatgcatatatcctataagctggaaattaagctgtttatccaaacaaagcc 3635875  T
Q  201 tcaaattcccaattattattaacaaaacaaaa-----atttaatctttagaaacaggggttaaga 260  Q
    ||||||||||||||||||||||||||||||||     | |||||||||||||| |||||||||||    
T  3635874 tcaaattcccaattattattaacaaaacaaaacaaaaacttaatctttagaaaaaggggttaaga 3635810  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 23918948 - 23918915
Alignment:
Q  119 gaaaataatttgactttattttatcttttgtaat 152  Q
    ||||| ||||||||||||||||||||||||||||    
T  23918948 gaaaacaatttgactttattttatcttttgtaat 23918915  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 34672906 - 34672939
Alignment:
Q  162 ctataagctggaaattaagctgtttatccaaaca 195  Q
    |||||||||| |||||||||||||||||||||||    
T  34672906 ctataagctgaaaattaagctgtttatccaaaca 34672939  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 6988109 - 6988076
Alignment:
Q  116 taagaaaataatttgactttattttatcttttgt 149  Q
    ||||||||||||||||||||||||||||||||||    
T  6988109 taagaaaataatttgactttattttatcttttgt 6988076  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 149
Target Start/End: Complemental strand, 34339897 - 34339867
Alignment:
Q  119 gaaaataatttgactttattttatcttttgt 149  Q
    |||||||||||||||||||||||||||||||    
T  34339897 gaaaataatttgactttattttatcttttgt 34339867  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 148
Target Start/End: Original strand, 3423847 - 3423876
Alignment:
Q  119 gaaaataatttgactttattttatcttttg 148  Q
    ||||||||||||||||||||||||||||||    
T  3423847 gaaaataatttgactttattttatcttttg 3423876  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 41702342 - 41702375
Alignment:
Q  162 ctataagctggaaattaagctgtttatccaaaca 195  Q
    |||||||||| |||||||||||||||||||||||    
T  41702342 ctataagctgaaaattaagctgtttatccaaaca 41702375  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 147
Target Start/End: Original strand, 10646368 - 10646396
Alignment:
Q  119 gaaaataatttgactttattttatctttt 147  Q
    |||||||||||||||||||||||||||||    
T  10646368 gaaaataatttgactttattttatctttt 10646396  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 6526382 - 6526420
Alignment:
Q  163 tataagctggaaattaagctgtttatccaaacaaagcct 201  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  6526382 tataagctgcaaattaagctgtttatccaaacaaggcct 6526420  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 34770883 - 34770849
Alignment:
Q  119 gaaaataatttgactttattttatcttttgtaatg 153  Q
    ||||| |||||||||||||||||||||||||||||    
T  34770883 gaaaacaatttgactttattttatcttttgtaatg 34770849  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 149
Target Start/End: Original strand, 38047934 - 38047964
Alignment:
Q  119 gaaaataatttgactttattttatcttttgt 149  Q
    |||||||||||||||||||||||||||||||    
T  38047934 gaaaataatttgactttattttatcttttgt 38047964  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 149
Target Start/End: Original strand, 32969197 - 32969226
Alignment:
Q  120 aaaataatttgactttattttatcttttgt 149  Q
    ||||||||||||||||||||||||||||||    
T  32969197 aaaataatttgactttattttatcttttgt 32969226  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 42573936 - 42573969
Alignment:
Q  162 ctataagctggaaattaagctgtttatccaaaca 195  Q
    |||||||||| |||||||||||||||||||||||    
T  42573936 ctataagctgcaaattaagctgtttatccaaaca 42573969  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 149
Target Start/End: Complemental strand, 4071873 - 4071843
Alignment:
Q  119 gaaaataatttgactttattttatcttttgt 149  Q
    |||||||||||||||||||||||||||||||    
T  4071873 gaaaataatttgactttattttatcttttgt 4071843  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 149
Target Start/End: Complemental strand, 11917550 - 11917520
Alignment:
Q  119 gaaaataatttgactttattttatcttttgt 149  Q
    |||||||||||||||||||||||||||||||    
T  11917550 gaaaataatttgactttattttatcttttgt 11917520  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 32724110 - 32724077
Alignment:
Q  119 gaaaataatttgactttattttatcttttgtaat 152  Q
    ||||||| ||||||||||||||||||||||||||    
T  32724110 gaaaatagtttgactttattttatcttttgtaat 32724077  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 52333419 - 52333386
Alignment:
Q  162 ctataagctggaaattaagctgtttatccaaaca 195  Q
    ||||||||||||||||||||| ||||||||||||    
T  52333419 ctataagctggaaattaagctttttatccaaaca 52333386  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 54214935 - 54214895
Alignment:
Q  155 atatatcctataagctggaaattaagctgtttatccaaaca 195  Q
    |||||| |||||||||| |||||||| ||||||||||||||    
T  54214935 atatatgctataagctgcaaattaagttgtttatccaaaca 54214895  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 149
Target Start/End: Complemental strand, 1395662 - 1395632
Alignment:
Q  119 gaaaataatttgactttattttatcttttgt 149  Q
    |||||||||||||||||||||||||||||||    
T  1395662 gaaaataatttgactttattttatcttttgt 1395632  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 149
Target Start/End: Complemental strand, 25195415 - 25195385
Alignment:
Q  119 gaaaataatttgactttattttatcttttgt 149  Q
    |||||||||||||||||||||||||||||||    
T  25195415 gaaaataatttgactttattttatcttttgt 25195385  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 149
Target Start/End: Original strand, 32555060 - 32555090
Alignment:
Q  119 gaaaataatttgactttattttatcttttgt 149  Q
    |||||||||||||||||||||||||||||||    
T  32555060 gaaaataatttgactttattttatcttttgt 32555090  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 149
Target Start/End: Original strand, 23530265 - 23530294
Alignment:
Q  120 aaaataatttgactttattttatcttttgt 149  Q
    ||||||||||||||||||||||||||||||    
T  23530265 aaaataatttgactttattttatcttttgt 23530294  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 11613492 - 11613460
Alignment:
Q  117 aagaaaataatttgactttattttatcttttgt 149  Q
    ||||||||||||||| |||||||||||||||||    
T  11613492 aagaaaataatttgattttattttatcttttgt 11613460  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 27896330 - 27896378
Alignment:
Q  153 gcatatatcctataagctggaaattaagctgtttatccaaacaaagcct 201  Q
    |||| ||| |||||||||| ||||||||||||||||| ||||| |||||    
T  27896330 gcatttatactataagctgcaaattaagctgtttatcaaaacagagcct 27896378  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 149
Target Start/End: Original strand, 28467386 - 28467416
Alignment:
Q  119 gaaaataatttgactttattttatcttttgt 149  Q
    |||||||||||||||||||||||||||||||    
T  28467386 gaaaataatttgactttattttatcttttgt 28467416  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 4920907 - 4920940
Alignment:
Q  162 ctataagctggaaattaagctgtttatccaaaca 195  Q
    |||||||||| |||||||||||||||||||||||    
T  4920907 ctataagctgcaaattaagctgtttatccaaaca 4920940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 34619519 - 34619552
Alignment:
Q  162 ctataagctggaaattaagctgtttatccaaaca 195  Q
    |||||||||| |||||||||||||||||||||||    
T  34619519 ctataagctgcaaattaagctgtttatccaaaca 34619552  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 147
Target Start/End: Complemental strand, 45234188 - 45234160
Alignment:
Q  119 gaaaataatttgactttattttatctttt 147  Q
    |||||||||||||||||||||||||||||    
T  45234188 gaaaataatttgactttattttatctttt 45234160  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 147
Target Start/End: Original strand, 34076 - 34104
Alignment:
Q  119 gaaaataatttgactttattttatctttt 147  Q
    |||||||||||||||||||||||||||||    
T  34076 gaaaataatttgactttattttatctttt 34104  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 147
Target Start/End: Original strand, 27595646 - 27595674
Alignment:
Q  119 gaaaataatttgactttattttatctttt 147  Q
    |||||||||||||||||||||||||||||    
T  27595646 gaaaataatttgactttattttatctttt 27595674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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