View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19611_low_5 (Length: 250)
Name: NF19611_low_5
Description: NF19611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19611_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 90 - 242
Target Start/End: Complemental strand, 5363579 - 5363427
Alignment:
| Q |
90 |
tttcaccttaatcatcattattttttatgttaatctttgctaacggtgagttttgaagcaaaaattccactactccagcaggtattaatttagctttctt |
189 |
Q |
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| T |
5363579 |
tttcaccttaatcatcattattttttatgttaatctttgctaaaggtgagttttgaagcaaaaattccactactccagcaggtatgaatttagttttctt |
5363480 |
T |
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| Q |
190 |
caaatgaattccagaaccttctttattgaacatatgcagtttcaagtataatc |
242 |
Q |
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| T |
5363479 |
caaatgaattccagaaccttctttattgaacatatgcagtttcaagtctaatc |
5363427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 201
Target Start/End: Complemental strand, 5356968 - 5356857
Alignment:
| Q |
90 |
tttcaccttaatcatcattattttttatgttaatctttgctaacggtgagttttgaagcaaaaattccactactccagcaggtattaatttagctttctt |
189 |
Q |
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||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||| |
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| T |
5356968 |
tttcaccttaatcatcattatctataatgttaatctttgctaacggtgagttttgaagcaaaaattccactactccataaggtatgaatttatctttctt |
5356869 |
T |
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| Q |
190 |
caaatgaattcc |
201 |
Q |
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|||| ||||||| |
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| T |
5356868 |
caaacgaattcc |
5356857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 220
Target Start/End: Complemental strand, 5375381 - 5375251
Alignment:
| Q |
90 |
tttcaccttaatcatcattattttttatgttaatctttgctaacggtgagttttgaagcaaaaattccactactccagcaggtattaatttagctttctt |
189 |
Q |
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||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | |
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| T |
5375381 |
tttcaccttaatcatcattatctatgatggtaatctttgctaacggtgagttttgaagcaaaaattccactactccatcaggtatgaatttagctttaat |
5375282 |
T |
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| Q |
190 |
caaatgaattccagaaccttctttattgaac |
220 |
Q |
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| T |
5375281 |
taactgaattctggcaccttctttcttgaac |
5375251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 5369636 - 5369526
Alignment:
| Q |
97 |
ttaatcatcattattttttatgttaatctttgctaacggtgagttttgaagcaaaaattccactactccagcaggtattaatttagctttcttcaaatga |
196 |
Q |
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|||||||||||||||| | | ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| | |||| ||||| |||||||| |
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| T |
5369636 |
ttaatcatcattatttatgaagttaacctttgctaacggtgaggtttgaagcaaaaattccactactccaacaggtatgagtttatctttcgtcaaatga |
5369537 |
T |
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| Q |
197 |
attccagaacc |
207 |
Q |
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|||| |||||| |
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| T |
5369536 |
attctagaacc |
5369526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 7179086 - 7179036
Alignment:
| Q |
116 |
atgttaatctttgctaacggtgagttttgaagcaaaaattccactactcca |
166 |
Q |
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||||||| ||||||| | |||||||||||||||||||| |||| ||||||| |
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| T |
7179086 |
atgttaacctttgctgatggtgagttttgaagcaaaaaatccagtactcca |
7179036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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