View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19611_low_6 (Length: 211)
Name: NF19611_low_6
Description: NF19611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19611_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 5363876 - 5363683
Alignment:
| Q |
1 |
aaattcttctagattttgattctccactgtgccatttctgcaaaatccaacatctataacattatcatctattctactgtgatcttggttctagtttcga |
100 |
Q |
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| T |
5363876 |
aaattcttctagattttgaatctccactgtgccatttctgcaaaatccaacatctataacattatcatctattctactgtgatcttggttctagtttcga |
5363777 |
T |
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| Q |
101 |
ctcaaaaagtatcaccattgagaacttgtattaacatccgcacaaattcagattactagcgttatatgaactcaaacaagtaggacatgttcat |
194 |
Q |
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| T |
5363776 |
ctcaaaaagtatcaccattgagaacttgtattaacatccgcacaaattcagattactatcgttatatgaactcaaacaagtaggacattttcat |
5363683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 5375681 - 5375502
Alignment:
| Q |
1 |
aaattcttctagattttgat-tctccactgtgccatttctgcaaaatccaacatctataacattatcatctattctactgtgatcttggttctagtttcg |
99 |
Q |
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|||||| ||||| ||||| | ||||||| ||||| ||||||||||| ||| |||||| ||| ||| | |||||||| ||||||| | ||| ||||| |
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| T |
5375681 |
aaattcctctagcttttgctgtctccaccgtgccttttctgcaaaacccagcatctacaactttaacttctattcttgtgtgatcagtgatcttgtttca |
5375582 |
T |
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| Q |
100 |
actcaaaaagtatcaccattgagaacttgtattaacatccgcacaaattcagattactagcgttatatgaactcaaacaa |
179 |
Q |
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||| |||| ||| ||| |||||||||||||||||| |||| ||||||||||| |||| ||| |||||||||||||||||| |
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| T |
5375581 |
actgaaaaggtaacactattgagaacttgtattaaaatccacacaaattcaggttacaagccttatatgaactcaaacaa |
5375502 |
T |
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