View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19612_high_12 (Length: 372)

Name: NF19612_high_12
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19612_high_12
NF19612_high_12
[»] chr5 (3 HSPs)
chr5 (79-358)||(42133534-42133813)
chr5 (254-358)||(23968376-23968480)
chr5 (109-231)||(19409782-19409904)
[»] chr7 (4 HSPs)
chr7 (79-358)||(18483955-18484234)
chr7 (79-243)||(18479236-18479400)
chr7 (238-358)||(38849626-38849746)
chr7 (200-243)||(24280256-24280299)
[»] chr8 (2 HSPs)
chr8 (79-358)||(21031929-21032201)
chr8 (79-240)||(19873811-19873972)
[»] chr1 (1 HSPs)
chr1 (109-358)||(14506890-14507139)
[»] chr6 (3 HSPs)
chr6 (109-336)||(28521999-28522218)
chr6 (109-194)||(28294705-28294790)
chr6 (109-194)||(28517283-28517368)
[»] scaffold0933 (1 HSPs)
scaffold0933 (79-240)||(3861-4025)
[»] scaffold1939 (1 HSPs)
scaffold1939 (79-182)||(1120-1223)
[»] chr3 (1 HSPs)
chr3 (238-346)||(17482959-17483067)
[»] scaffold0570 (1 HSPs)
scaffold0570 (199-231)||(2966-2998)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 79 - 358
Target Start/End: Original strand, 42133534 - 42133813
Alignment:
Q  79 tattacttttcatgtttttagctttactattagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42133534 tattacttttcatgtttttagctttactattagagtagcaattctctagctgctagttcacagtacttagcatactttccctcttttgtataaataccat 42133633  T
Q  179 tgtactgtactcttttgagataatgagaattaagagtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttc 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42133634 tgtactgtactcttttgagataatgagaattaagagtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttc 42133733  T
Q  279 cgatcctaaccgttttctgttacggttgtttccgccgcattcttcttcttctacctctgtttttcttccctctttccacc 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42133734 cgatcctaaccgttttctgttacggttgtttccgccgcattcttcttcttctacctctgtttttcttccctctttccacc 42133813  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 254 - 358
Target Start/End: Complemental strand, 23968480 - 23968376
Alignment:
Q  254 tttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtttccgccgcattcttcttcttctacctctgtttttcttccctcttt 353  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||    
T  23968480 tttctctctcatgtgagagaagttccgatcctaaccgttttctgttacggttgcttccgccgcaatcttcatcttctacctctgtttttcttccttcttt 23968381  T
Q  354 ccacc 358  Q
    |||||    
T  23968380 ccacc 23968376  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 19409904 - 19409782
Alignment:
Q  109 tagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactcttttgagataatgagaat 208  Q
    ||||||||||||||||| | | ||||||||| |||||||||||||||||||||  ||||||||||| |||||||||| |||||||| |    ||||||||    
T  19409904 tagagtagcaattctctagtttctagttcacggtacttagcatactttccctcacttgtataaatatcattgtactgcactcttttcatcctatgagaat 19409805  T
Q  209 taagagtttcattcatttctctc 231  Q
    |||||||||||||||||||||||    
T  19409804 taagagtttcattcatttctctc 19409782  T

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Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 79 - 358
Target Start/End: Complemental strand, 18484234 - 18483955
Alignment:
Q  79 tattacttttcatgtttttagctttactattagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18484234 tattacttttcatgtttttagctttactattagagtagcaattctctagttgctagttcacagtacttagcatactttccctcttttgtataaataccat 18484135  T
Q  179 tgtactgtactcttttgagataatgagaattaagagtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttc 278  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18484134 tgtactgtactcttttgacataatgagaattaagagtttcattcatttctctctaagtcataatatggtatcagatttctctctcatgagagagaagttc 18484035  T
Q  279 cgatcctaaccgttttctgttacggttgtttccgccgcattcttcttcttctacctctgtttttcttccctctttccacc 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18484034 cgatcctaaccgttttctgttacggttgtttccgccgcattcttcttcttctacctctgtttttcttccctctttccacc 18483955  T

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Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 79 - 243
Target Start/End: Complemental strand, 18479400 - 18479236
Alignment:
Q  79 tattacttttcatgtttttagctttactattagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18479400 tattacttttcatgtttttagctttactattagagtagcaattctctagttgctagttcacagtacttagcatacttttcctcttttgtataaataccat 18479301  T
Q  179 tgtactgtactcttttgagataatgagaattaagagtttcattcatttctctccaagtcataata 243  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  18479300 tgtactgtactcttttgacataatgagaattaagagtttcattcatttctctctaagtcataata 18479236  T

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Target: chr7; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 238 - 358
Target Start/End: Complemental strand, 38849746 - 38849626
Alignment:
Q  238 ataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtttccgccgcattcttcttcttctacctctg 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38849746 ataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtttccgccgcattcttcatcttctacctctg 38849647  T
Q  338 tttttcttccctctttccacc 358  Q
    |||||||||| ||||||||||    
T  38849646 tttttcttccttctttccacc 38849626  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 24280299 - 24280256
Alignment:
Q  200 aatgagaattaagagtttcattcatttctctccaagtcataata 243  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  24280299 aatgagaattaagagtttcattcatttctctctaagtcataata 24280256  T

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Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 79 - 358
Target Start/End: Complemental strand, 21032201 - 21031929
Alignment:
Q  79 tattacttttcatgtttttagctttactattagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccat 178  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21032201 tattacttttcatgtttt-agctttactgttagagtagcaattctctagttgctagttcacagtacttagcatactttccctcttttgtataaataccat 21032103  T
Q  179 tgtactgtactcttttgagataatgagaattaagagtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttc 278  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  21032102 tgtactgtactcttttcagataatgagaattaagagtttcattcatttctctctaagtcatattatggtatcagatttctctctcatgagagagaagttc 21032003  T
Q  279 cgatcctaaccgttttctgttacggttgtttccgccgcattcttcttcttctacctctgtttttcttccctctttccacc 358  Q
    |||| |||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21032002 cgattctaaccgttttct------gttgtttccgccgcattcttcttcttctacctctgtttttcttccctctttccacc 21031929  T

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Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 19873811 - 19873972
Alignment:
Q  79 tattacttttcatgtttttagctttacta-ttagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaatacca 177  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19873811 tattacttttcatgtttt-agctttactggttagagtagcaattctctagttgctagttcacagtacttagcatactttccctcttttgtataaatacca 19873909  T
Q  178 ttgtactgtactcttttgagataatgagaattaagagtttcattcatttctctccaagtcata 240  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  19873910 ttgtactgtactctttttagataatgagaattaagagtttcattcatttctctctaagtcata 19873972  T

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Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 109 - 358
Target Start/End: Complemental strand, 14507139 - 14506890
Alignment:
Q  109 tagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactcttttgagataatgagaat 208  Q
    ||||||||||||||||| | ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| |  ||||||||||    
T  14507139 tagagtagcaattctctagttgctagttcacagtatttagcatactttccctctcttgtataaatatcattgtactgtactcttttcatctaatgagaat 14507040  T
Q  209 taagagtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14507039 taagagtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtt 14506940  T
Q  309 tccgccgcattcttcttcttctacctctgtttttcttccctctttccacc 358  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  14506939 tccgccgcattcttcatcttctacctctgtttttcttccttctttccacc 14506890  T

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Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 109 - 336
Target Start/End: Complemental strand, 28522218 - 28521999
Alignment:
Q  109 tagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactcttttgagataatgagaat 208  Q
    ||||||||||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| |  ||||||||||    
T  28522218 tagagtagcaattctctagtttctagttcacagtacttagcatactttccctcatttgtataaatatcattgtactgcactcttttcatctaatgagaat 28522119  T
Q  209 taagagtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtt 308  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28522118 taagagtttcattcatttctc--------ataatatggtatcagatttctctctcatgagagagaagttccgatcctaactgttttctgttacggttgtt 28522027  T
Q  309 tccgccgcattcttcttcttctacctct 336  Q
    ||||||||||||||| ||||||||||||    
T  28522026 tccgccgcattcttcatcttctacctct 28521999  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 28294705 - 28294790
Alignment:
Q  109 tagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactctttt 194  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||  ||||||||    
T  28294705 tagagtagcaattctctagttgctagttcacagtacttagcatactttccctctattgtataaatatcattgtactacactctttt 28294790  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 28517368 - 28517283
Alignment:
Q  109 tagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactctttt 194  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||  ||||||||    
T  28517368 tagagtagcaattctctagttgctagttcacagtacttagcatactttccctctattgtataaatatcattgtactacactctttt 28517283  T

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Target: scaffold0933 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 3861 - 4025
Alignment:
Q  79 tattacttttcatgtttttagctttactattagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccat 178  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  3861 tattacttttcatgtttttagctttcctattaaagtagcaattctctagttgctagttcacagtaattagcatactttccctcttttatataaataccat 3960  T
Q  179 tgtactgtactcttt---tgagataatgagaattaagagtttcattcatttctctccaagtcata 240  Q
    |||||||||||||||   | | | |||||||||||||||||||||||||||||||| ||||||||    
T  3961 tgtactgtactcttttcataacaaaatgagaattaagagtttcattcatttctctctaagtcata 4025  T

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Target: scaffold1939 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold1939
Description:

Target: scaffold1939; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 1120 - 1223
Alignment:
Q  79 tattacttttcatgtttttagctttactattagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1120 tattacttttcatgtttttagctttactattagagtagcaattctctagctgctagttcacagtacttagcatactttccctcttttgtataaataccat 1219  T
Q  179 tgta 182  Q
    ||||    
T  1220 tgta 1223  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 346
Target Start/End: Complemental strand, 17483067 - 17482959
Alignment:
Q  238 ataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtttccgccgcattcttcttcttctacctctg 337  Q
    |||||||||||| |||||||||||||  | ||||||||||  ||||||||| ||||||| ||||||||| ||||||  || ||||| | ||| |||||||    
T  17483067 ataatatggtattagatttctctctcccgtgagagaagttttgatcctaactgttttctattacggttgcttccgctccaatcttcattttcaacctctg 17482968  T
Q  338 tttttcttc 346  Q
     ||||||||    
T  17482967 attttcttc 17482959  T

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Target: scaffold0570 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 2966 - 2998
Alignment:
Q  199 taatgagaattaagagtttcattcatttctctc 231  Q
    |||||||||||||||| ||||||||||||||||    
T  2966 taatgagaattaagagattcattcatttctctc 2998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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