View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19612_high_13 (Length: 367)
Name: NF19612_high_13
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19612_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 37067703 - 37068041
Alignment:
| Q |
19 |
ctaacctttttaataagggaaaagagatattgataggttgttccatgtagccatgaaaaagaaattcctcaagacgtgggcaaccagatagtaattcaag |
118 |
Q |
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| T |
37067703 |
ctaacctttttaataagggaaaagagatattgataggttgttccaagtagccatgaaaaagaaattcctcaagacgtgggcaaccagatagtaattcaat |
37067802 |
T |
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| Q |
119 |
aagatcatactcactacgatcctcattaaaatcaagcctaaataaatcgagatgaagaatctttagtgacggtaaatgtatatcaaaagaagaattaagt |
218 |
Q |
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| T |
37067803 |
aagatcatactcactacgatcctcattaaaatcaagcctaaataaatcgagatgaagaatctttagtgacggtaaatgtatatcaaaagaagaatcaagt |
37067902 |
T |
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| Q |
219 |
gttggttgaaattcaatatgaccacgcaattttaagaccacgagtgactcggatctaaatagccttagcggcaatatagggttaggtctgctcccaaact |
318 |
Q |
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| T |
37067903 |
gttggttgaaattcaatatgaccacgtaattttaagaccacgagtgactcggatctaaatagccttagcggcaatatagggttaggtctgctcccaaact |
37068002 |
T |
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| Q |
319 |
ccaagtgaagttcctgtaccttgagatccaatgcctttg |
357 |
Q |
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| T |
37068003 |
ccaagtgaagttcctgtaccttgagatccaatgcctttg |
37068041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 20279116 - 20279211
Alignment:
| Q |
167 |
gagatgaagaatctttagtgacggtaaatgtatatcaaaagaagaattaagtgttggttgaaattcaatatgaccacgcaattttaagaccacgagtgac |
266 |
Q |
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| T |
20279116 |
gagatgaagaatctttagtgacggtaaatatacatgaaaagaagaattgagtgttggttg-aattc----tg-ccccgcaattttaagaccacgagtgac |
20279209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 20431686 - 20431781
Alignment:
| Q |
167 |
gagatgaagaatctttagtgacggtaaatgtatatcaaaagaagaattaagtgttggttgaaattcaatatgaccacgcaattttaagaccacgagtgac |
266 |
Q |
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| T |
20431686 |
gagatgaagaatctttagtgacggtaaatatacatgaaaagaagaattgagtgttggttg-aattc----tg-ccccgcaattttaagaccacgagtgac |
20431779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 20476697 - 20476758
Alignment:
| Q |
167 |
gagatgaagaatctttagtgacggtaaatgtatatcaaaagaagaattaagtgttggttgaa |
228 |
Q |
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| T |
20476697 |
gagatgaagaatctttagtgacggtaaatgtacatgaaaagaggaattgagtgttggttgaa |
20476758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 20440388 - 20440480
Alignment:
| Q |
170 |
atgaagaatctttagtgacggtaaatgtatatcaaaagaagaattaagtgttggttgaaattcaatatgaccacgcaattttaagaccacgagtgactc |
268 |
Q |
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| T |
20440388 |
atgaagaatctttagtgacggtaaatatacatgaaatgaagaattgagtgttggttg-aattc----tg-ccccgcaattttaagaccacgagtgactc |
20440480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 20443987 - 20444048
Alignment:
| Q |
167 |
gagatgaagaatctttagtgacggtaaatgtatatcaaaagaagaattaagtgttggttgaa |
228 |
Q |
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| T |
20443987 |
gagatgaagaatctttagtgacggtaaatatacatgaaaagcagaattgagtgttggttgaa |
20444048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 20450860 - 20450921
Alignment:
| Q |
167 |
gagatgaagaatctttagtgacggtaaatgtatatcaaaagaagaattaagtgttggttgaa |
228 |
Q |
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| T |
20450860 |
gagatgaagaatctttagtgacggtaaatatacatgaaaagaagaattgagttttggttgaa |
20450921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 20462483 - 20462544
Alignment:
| Q |
167 |
gagatgaagaatctttagtgacggtaaatgtatatcaaaagaagaattaagtgttggttgaa |
228 |
Q |
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| T |
20462483 |
gagatgaagaatctttagtgacggtaaatatacatgaagagaagaattgagtgttggttgaa |
20462544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 14266971 - 14266910
Alignment:
| Q |
167 |
gagatgaagaatctttagtgacggtaaatgtatatcaaaagaagaattaagtgttggttgaa |
228 |
Q |
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| T |
14266971 |
gagatgaagaatctttaatgatggtaaatatacatcaaaagaagaatcgagttttggttgaa |
14266910 |
T |
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