View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19612_high_16 (Length: 317)
Name: NF19612_high_16
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19612_high_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 8628620 - 8628935
Alignment:
| Q |
1 |
tggttaaccatagtagtataatcgtgaaaatgatatcacgacatagtcatcaaaccatattttcaactcacccttatnnnnnnnnnnggttattaatagc |
100 |
Q |
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|||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| |
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| T |
8628620 |
tggttaaccataataatataattgtaaaaatgatatcacgacatagtcatcaaaccatattttcgactcacccttataaaaaaaaaag-ttattaatagc |
8628718 |
T |
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| Q |
101 |
tagaaaataagagttgttaacttgtaatatatgctgttctcaaaataacaaacttgtctttgtttttgtaattaccttaaaaccaacatgaggagaatat |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8628719 |
tagaaaataagagttgttaacttgtcatatatgctgttctcaaaataacaaacttgtctttgtttttgtaattaccttaaaaccaacatgaggagaatat |
8628818 |
T |
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| Q |
201 |
gacaactaagtttgaaaattnnnnnnncacatattacacactaattaaatcattttggcaacccatttctgttttagtttttgttattacaaatacaaac |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8628819 |
gacaactaagtttgaaaattaaaaaaacacatattacacactaattaaatcattttggcaacccatttctgttttagtttttgttattacaaatacaatc |
8628918 |
T |
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| Q |
301 |
atcatcgtaattacaat |
317 |
Q |
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||||||||||||||||| |
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| T |
8628919 |
atcatcgtaattacaat |
8628935 |
T |
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