View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19612_high_6 (Length: 495)
Name: NF19612_high_6
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19612_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 205 - 487
Target Start/End: Original strand, 26019244 - 26019526
Alignment:
| Q |
205 |
gtaagcaaatgttaattgttagtatgttgtgttactagctgaactttgaaccctggatctcttagttcttagtctcagttcaaccacttaagctaagtct |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26019244 |
gtaagcaaatgttaattgttagtatgttgtgttactagctgaactttgaaccctggatctcttcgttcttagtctcagttcaaccacttaagctacgtct |
26019343 |
T |
|
| Q |
305 |
tgaagacgttgtttatgnnnnnnnatttattccgctgtgtttgttgctaatgctcatttatgtcatgtttcactctttcttgcactaaaagttttcccag |
404 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26019344 |
tgaagacgttgtttatgtttttttatttattccgttgtgtttgttgctaatgctaatttatgtcatgtttcactctttcttgcactaaaagttttcccag |
26019443 |
T |
|
| Q |
405 |
tatgaatgatggatcaaaccgtgagttgaattagcctactgtttcgacctagtatgatactattagatgaactcgagtattat |
487 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26019444 |
tatggatgatggatcaaaccgtgagttgaattagcctactgtttcgacctagtatgatactattagatgaactcgagtattat |
26019526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 26019059 - 26019217
Alignment:
| Q |
19 |
aggattgctttctttctatggtattgatcctaaccaagccatggaacttcctgttaactgtaagcttatggacaacttccattgctagtcatgtgtatcg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26019059 |
aggattgctttctttctatggtattgatcctaaccaagccatggaacttcctgttaactgtaagcttatggacaacttccattgctagtcatgtgtatcg |
26019158 |
T |
|
| Q |
119 |
ggacgaatgcatatgcaagggctactaaactaataatgtaatccatggtttcactcttg |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26019159 |
ggacgaatgcatatgcaagggctactaaactaataatgtaatccatggtttcgctcttg |
26019217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 26003203 - 26003271
Alignment:
| Q |
23 |
ttgctttctttctatggtattgatcctaaccaagccatggaacttcctgttaactgtaagcttatggac |
91 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||| || || ||||| ||||||||| ||||| |
|
|
| T |
26003203 |
ttgctttctttctatggtattgatccagatcaagccatggatctcccagttaagtgtaagcttgtggac |
26003271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University