View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19612_high_8 (Length: 402)
Name: NF19612_high_8
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19612_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 3 - 388
Target Start/End: Original strand, 5419412 - 5419797
Alignment:
| Q |
3 |
tttatacaatttcctaacatatggttcaatatatccaaacacaacactccaaattctcaacataatcccaaagatgatatctttccccaatttccttatc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5419412 |
tttatacaatttcctaacatatggttcaatatatccaaacacaacactccaaattctcaacataatcccaaagatgatatctttccccaatttccttatc |
5419511 |
T |
|
| Q |
103 |
ccaaaaggatccataaagaataagcaacagcgaaacatgaaaaacaatggataggttataaacatgaaaattaacttaatttgaaactctaatgcgttaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5419512 |
ccaaaaggatccataaagaataagcaacagcgaaacatgaaaaacaatggataagttataaacatgaaaattaacttaatttgaaactctaatgcgttaa |
5419611 |
T |
|
| Q |
203 |
ttatcaatcctgctatcaattcgagaaaactcgaagatgaatcatggactcgtgacaccgagtcaacagaatcggaagctaaatcatcatttgtagctgt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5419612 |
ttatcaatcctgctatcaattcgagaaaactcgaagatgaatcatggagtcgtgacaccgagtcaatagaatcggaagctaaatcatcatttgtagctgt |
5419711 |
T |
|
| Q |
303 |
agttattgtagattcttcgttgttctcttcaattgcgtgaattgaaggtggtgaagtgctaggttgtttctcggtgtaattttcat |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5419712 |
agttattgtagattcttcgttgttctcttcaattgcgtgaattgaaggtggtgaagtgctaggttgtttctcggtgtaattttcat |
5419797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University