View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19612_low_10 (Length: 395)
Name: NF19612_low_10
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19612_low_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 41688867 - 41688483
Alignment:
| Q |
19 |
ctcataccaattgcaggaattttaatagttagccatggaaaatg-atacaagtgataacatatctaaatacaaaaacaaagatgaatttaacgacatacc |
117 |
Q |
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| T |
41688867 |
ctcataccaattgcaggaattttaatagttagccattgaaaatggatacaagtgataacatatctaaaaacaaaaacaaagatgaatttaacgacatacc |
41688768 |
T |
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| Q |
118 |
tttatatcaaagatatcggtttaaggagagaaatgcatgagagtagtgactac--gatagaagtttaggtttataattagggtttttatcttattattta |
215 |
Q |
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| T |
41688767 |
tttatatcaaagatatcggtttaaggagagaaatgcatgagaggagtgactacctaatagaagtttaggtttataattagggtttttatcttattattta |
41688668 |
T |
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| Q |
216 |
gtattgtctctcatttaaatagttaagca-atgttctcgtggggttaactaaatgggtcaacccattgcataagcatcggtttctcatgggcttaattaa |
314 |
Q |
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| T |
41688667 |
gtattgtctctcatttaaatagttaagcagttgttcccgtgggtttaactaaatggatcaacccattgcataagcatcggtttctcatgggcttaacaaa |
41688568 |
T |
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| Q |
315 |
atggatcaatccattacaattcatttagtgatgatatcgtcaac----taattaccgtttagaacaataaactataacatatatt |
395 |
Q |
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| T |
41688567 |
atggatcaatccattacaattcatttagtgattatattgtcaactaattaattactgtttagcacaataaactataacatatatt |
41688483 |
T |
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