View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19612_low_11 (Length: 385)
Name: NF19612_low_11
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19612_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 23 - 367
Target Start/End: Complemental strand, 34549840 - 34549516
Alignment:
| Q |
23 |
cagagatgaagaccttttgttacgaaggaatcttgtacactccaggtatttataga-atttatttagaaaataccaaatttgacaaagatgaagatgtta |
121 |
Q |
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| T |
34549840 |
cagagatgaagaccttttggtacgaaggaatcttatacactccaggtcttga-agagatttatgtagaaaatactaaatttgacaaagatgaagatgtta |
34549742 |
T |
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| Q |
122 |
atgaagtgatacaacgacagaataaatgattgtgtgtttggtgtgaggtatgaattattacaactatctccttttgtccctcctaactatgtctctttcc |
221 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34549741 |
atgaagtgatacaacgacagaataaatgattgagtgtttggtgtgaggtatgaattattacaactatctccttttgtccctcctacctatgtctctttcc |
34549642 |
T |
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| Q |
222 |
tcactcgtttataatctctggtttagagaagaatccatcttctttaatgcatgaatttctcaaagtttctttttccctattcttgaagtttcgaaaataa |
321 |
Q |
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| T |
34549641 |
tcactcgtttataatctctggtttagagaagaacccatcttctttaatgcatgaatttctca--------------------ttgaagtttcgaaaataa |
34549562 |
T |
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| Q |
322 |
tttcacataaaggaactaagattttgtgtacaactttatcaattag |
367 |
Q |
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| T |
34549561 |
tttcacataaaggaactaagattttgtgtacaactttatcaattag |
34549516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 34377540 - 34377711
Alignment:
| Q |
23 |
cagagatgaagaccttttgttacgaaggaatcttgtacactccaggtatttatagaatttatttagaaaataccaaatttgacaaagatgaagatgttaa |
122 |
Q |
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||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||| |
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| T |
34377540 |
cagagatgaagaccttttggtacaatggaatcttgtacactccaggtatttatagaatttgtgtagaagataccaaatttgacatagatgaagatgttaa |
34377639 |
T |
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| Q |
123 |
tgaagtgatacaacgacagaataaatgattgtgtgtttggtgtgaggtatgaattattacaactatctcctt |
194 |
Q |
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| T |
34377640 |
tgaagtgatacaacgacagaataaatgattgtgtgtttggtgtgaggtatgaattattacaactttctcctt |
34377711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 23 - 309
Target Start/End: Original strand, 135045 - 135344
Alignment:
| Q |
23 |
cagagatgaagaccttttgttacgaaggaatcttgtacactccaggtatttatagaatttatttagaaaataccaaatttgacaaagatgaagatgttaa |
122 |
Q |
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||||||||||||||||||| | |||||||||||| ||||| ||| || ||||| ||||| |||| ||||||||||||||||| || | ||||||||||| |
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| T |
135045 |
cagagatgaagaccttttggttcgaaggaatcttatacaccccacgtctttatgaaatttctttaaaaaataccaaatttgacgaatacgaagatgttaa |
135144 |
T |
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| Q |
123 |
tgaagtgatacaacgacagaataaatgattgtgtgtttggtgtgaggtatgaattatt-----acaactatctccttttgtc--cctcctaactatgtct |
215 |
Q |
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||| |||||||||||||| |||||||||| | ||| ||||| |||||||| | || | || ||||||| |||| ||| ||||||||||| |
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| T |
135145 |
tgacgtgatacaacgacacaataaatgatcgagtg-ttggtatgaggtattacaactttctccgcctctttctccttctgtcttactcttaactatgtct |
135243 |
T |
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| Q |
216 |
ctttcctcac--tcgtt-tataatctctggtttagagaagaatccatc----ttctttaatgcatgaatttctcaaagtttctttttccctattcttgaa |
308 |
Q |
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| T |
135244 |
ctttcctctcggtcgttctttcatctctggttttgagaagaacccatcttctttctttaatgcatgaatttctcaaagattatttttgcctattcttgaa |
135343 |
T |
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