View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19612_low_12 (Length: 375)
Name: NF19612_low_12
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19612_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 365
Target Start/End: Complemental strand, 55024836 - 55024485
Alignment:
| Q |
14 |
acaaagttcaacctgaaaattgtgaaaatgatatagaatatatgtaacttggcatttaataaattggaaagaaacaatatcatatgaagcgttcaaactt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
55024836 |
acaaagttcaacctgaaaattgtgaaaatgatatagaatatatgtaacttggcatttaataaattggaaagaaacaatatcatatgaagcattcaaactt |
55024737 |
T |
|
| Q |
114 |
agccaccggatgatcagtagaaatgagacatcattgagtttcacttccacttttcgagatcaaataaaacttcaaaattgacaaaataaagtttgaaatg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
55024736 |
agccaccggatgatcagtagaaatgagacatcattgagtttcacttccacttttccagatcaaataaaacttcaaaattgacaaaataaagtttggaatg |
55024637 |
T |
|
| Q |
214 |
tgcagaatcgtttaattgtttgattatttacagggaaaatttcttcttgttgccagacaaatcacaatacatcactactattttgatttatcatttatgt |
313 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55024636 |
tgcagaaccgtttaattgtttgattatttacagggaaaatttcttcttgttgccagacaaatcacaatacatcactactattttgatttatcatttatgt |
55024537 |
T |
|
| Q |
314 |
aactaaaggtattgcaagtctaaccggaattttagacgattgctgctttctc |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
55024536 |
aactaaaggtattgcaagtctaaccggaattttagacgatttcagctttctc |
55024485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University