View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19612_low_15 (Length: 365)
Name: NF19612_low_15
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19612_low_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 180871 - 181217
Alignment:
| Q |
16 |
aatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctctattaccctcccta |
115 |
Q |
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| T |
180871 |
aatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaatatttcacatgttggctctattaccctcccta |
180970 |
T |
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| Q |
116 |
cccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacata |
215 |
Q |
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| T |
180971 |
ccccaaatattactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacata |
181070 |
T |
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| Q |
216 |
tcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagtaacagtgatctctacacctttcattat |
315 |
Q |
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| T |
181071 |
tcttgaattgcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttccagtaacagtgatctctacacctttcattat |
181170 |
T |
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| Q |
316 |
atgtctcaatatcaacccactactcttgcttccacctgctctgcctc |
362 |
Q |
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| T |
181171 |
atgtctcaatatcaacccactgctcttgcttccacttgctctgcctc |
181217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 365
Target Start/End: Original strand, 1701298 - 1701647
Alignment:
| Q |
16 |
aatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctctattaccctcccta |
115 |
Q |
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| T |
1701298 |
aatatgcagctgcactccgaatatgacggtccagaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctctattaccctcccta |
1701397 |
T |
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| Q |
116 |
cccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacata |
215 |
Q |
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| T |
1701398 |
cccccaatactactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacata |
1701497 |
T |
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| Q |
216 |
tcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagtaacagtgatctctacacctttcattat |
315 |
Q |
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| T |
1701498 |
tcttgaatttcaccctacctttttctgtgtaaaggatcaggtcacgggggcgacgttgatgcgcggttcaagtaacagtgatctctacacctttcatcct |
1701597 |
T |
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| Q |
316 |
atgtctcaatatcaacccactactcttgcttccacctgctctgcctcccc |
365 |
Q |
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| T |
1701598 |
aagtctcaatatcaacccactgctcttgcttccacctgctccgcctcccc |
1701647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 5400055 - 5400124
Alignment:
| Q |
34 |
gaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctcta |
103 |
Q |
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| T |
5400055 |
gaatatgatggtcccgaggaagttcaaattggtgatggtacaggtttaaaaatttctcatgttggctcta |
5400124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 26593135 - 26593053
Alignment:
| Q |
16 |
aatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttgg |
98 |
Q |
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| T |
26593135 |
aatatgcacattcactctgaatatgatggcccagaagaagtgcaaattggtgatggtacaggtttgaaaatttcccatgttgg |
26593053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 3541052 - 3541121
Alignment:
| Q |
34 |
gaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctcta |
103 |
Q |
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| T |
3541052 |
gaatatgatggtccagaggaagttcaaattggtgatggtacaggtttaaaaatttctcatgttggctcta |
3541121 |
T |
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