View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19612_low_16 (Length: 344)
Name: NF19612_low_16
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19612_low_16 |
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| [»] scaffold0690 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 9337065 - 9336774
Alignment:
| Q |
13 |
aaaacaaactaaatgagttagaaaagtgaatttatctcacctgtagaggataaaataatcttctttgatttgttcttgcatttaaagcatcctttgtcaa |
112 |
Q |
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| T |
9337065 |
aaaacaaaccaaatgaagtagaaaagtgaatttatctcacctgcagaggataaaataatcttctttgatttgttcttgcatttaaaacatccattgtcaa |
9336966 |
T |
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| Q |
113 |
tatttgtttccgaccatgataatgagattgaagtttgtcgtatcgtatacccattataagaaaatcccggatccggaagaataaggggtgaaactcgttg |
212 |
Q |
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| T |
9336965 |
gatttgtttccgaccatgataatgagattgaggtttgtagtatcgtatacccatta---gaatattctg---ccggaagaataaggggtgaaactcgttg |
9336872 |
T |
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| Q |
213 |
agacaatttggtgcagaatacaaggttcaagtcaaccatatcatcctcagatgctgccatataaattggacaagaaatcaggtcctgctgctcatctc |
310 |
Q |
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| T |
9336871 |
agacaatttggtgcagaatacaaggttcaagtcaaccatatcatcctcagatgctgccatataaattggacaagaaatcaggtcctgctgctcatctc |
9336774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 34 - 311
Target Start/End: Complemental strand, 9363951 - 9363680
Alignment:
| Q |
34 |
aaaagtgaatttatctcacctgtagaggataaaataatcttctttgatttgttcttgcatttaaagcatcctttgtcaatatttgtttccgaccatgata |
133 |
Q |
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| T |
9363951 |
aaaagtgaatttatctcacctgcagaggataaaattatcttctttgatttgttcttgcatttaaaacatccattgtcaagatttgtttccgaccatgata |
9363852 |
T |
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| Q |
134 |
atgagattgaagtttgtcgtatcgtatacccattataagaaaatcccggatccggaagaataaggggtgaaactcgttgagacaatttggtgcagaatac |
233 |
Q |
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| T |
9363851 |
atgagattgaggtttgtcgtatcgtatacccatt---agaatattctg---ccggaagaataaggggtgaaactcgttgagacaatttggtgcagaatac |
9363758 |
T |
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| Q |
234 |
aaggttcaagtcaaccatatcatcctcagatgctgccatataaattggacaagaaatcaggtcctgctgctcatctcc |
311 |
Q |
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| T |
9363757 |
aagattcaatttaaccatatcgtcgtcaaatgctgccatataaattggacaagaaatcatgtcctgctgctcatctcc |
9363680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 196 - 311
Target Start/End: Original strand, 9243289 - 9243405
Alignment:
| Q |
196 |
aggggtgaaactcgttgagacaatttggtgcagaatacaaggttcaagtc-aaccatatcatcctcagatgctgccatataaattggacaagaaatcagg |
294 |
Q |
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| T |
9243289 |
aggggtgaaactcgttgagataatttggtacaggatacaaggtttaaatttaactatatcgttgtcaaatgctgccatataaattggacaagaaatcatg |
9243388 |
T |
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| Q |
295 |
tcctgctgctcatctcc |
311 |
Q |
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| T |
9243389 |
tcctgctgctcagctcc |
9243405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 58 - 157
Target Start/End: Original strand, 9243178 - 9243277
Alignment:
| Q |
58 |
gaggataaaataatcttctttgatttgttcttgcatttaaagcatcctttgtcaatatttgtttccgaccatgataatgagattgaagtttgtcgtatcg |
157 |
Q |
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| T |
9243178 |
gaggataaaataatcttctttgatttattgctgcattttaagcatcctttgtcaaagtttgttttcgaccatgacaatgagatcgagttttgtcgtatcg |
9243277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 1128 - 851
Alignment:
| Q |
17 |
caaactaaatgagttagaaaagtgaatttatctcacctgtagaggataaaataatcttcttt---gatttgttcttgcatttaaagcatcctttgtcaat |
113 |
Q |
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||||| ||||||| || |||| |||| |||||||||| |||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||||| |
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| T |
1128 |
caaacgaaatgaggtataaaaatgaaggaatctcacctgcagaggataaaataatcttcttttttgatttgtgcttacattctaagcatcctttgtcaat |
1029 |
T |
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| Q |
114 |
atttgtttccgaccatgataatgagattgaagtttgtcgtatcgtatacccattataagaaaatcccggatccggaagaataaggggtgaaactcgttga |
213 |
Q |
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| T |
1028 |
tgttgttcccgaccatgataataagattgagttttgttgtatc------ccat-atac--agattc---atccgaaagaataaggggagaaactcgttga |
941 |
T |
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| Q |
214 |
gacaatttggtgcagaatacaaggttcaagtcaaccatatcatcctcagatgctgccatataaattggacaagaaatcaggtcctgctgc |
303 |
Q |
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| T |
940 |
gacaatttggtgcaggatacaaggttcaattcaacgacatcatcgtaaaatcctgcaatataaattggacaagaaatcatatcctgctgc |
851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 15910977 - 15911254
Alignment:
| Q |
17 |
caaactaaatgagttagaaaagtgaatttatctcacctgtagaggataaaataatcttcttt---gatttgttcttgcatttaaagcatcctttgtcaat |
113 |
Q |
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||||| ||||||| || |||| |||| |||||||||| |||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||||| |
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| T |
15910977 |
caaacaaaatgaggtataaaaatgaaggaatctcacctgcagaggataaaataatcttcttttttgatttgtgcttacattctaagcatcctttgtcaat |
15911076 |
T |
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| Q |
114 |
atttgtttccgaccatgataatgagattgaagtttgtcgtatcgtatacccattataagaaaatcccggatccggaagaataaggggtgaaactcgttga |
213 |
Q |
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| T |
15911077 |
tgttgttcccgaccatgataataagattgagttttgttgtatc------ccat-atac--agattc---atccgaaagaataaggggagaaactcgttga |
15911164 |
T |
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| Q |
214 |
gacaatttggtgcagaatacaaggttcaagtcaaccatatcatcctcagatgctgccatataaattggacaagaaatcaggtcctgctgc |
303 |
Q |
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||||||||||||||| ||||||||||||| ||||| | |||||| | | || |||| |||||||||||||||||||||| ||||||||| |
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| T |
15911165 |
gacaatttggtgcaggatacaaggttcaattcaacgacatcatcgtaaaatcctgcaatataaattggacaagaaatcatatcctgctgc |
15911254 |
T |
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