View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19612_low_2 (Length: 668)
Name: NF19612_low_2
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19612_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 19 - 658
Target Start/End: Complemental strand, 35278158 - 35277506
Alignment:
| Q |
19 |
acccataagacaaatttatcatctctgagttgtttctggcctcacttaaataaagctcaatgttactatatttaatttccaaacatgacttagcaatcat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35278158 |
acccataagacaaatttatcatctctgagttgtttctggcctcacttaaataaagctcaatgttactatatttaatttccaaacatgacttagcaatcat |
35278059 |
T |
|
| Q |
119 |
tgatggaagagttctgttattgactgattttagtcctaagagtttctttgcttgcttttctgtctctcagctggctatctctgagatactctgtaaagat |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35278058 |
tgatggaagagttgtgttattgactgattttagtcctaagagtttctttgcttgcttctctgtctctcagctggctatctctgagatactctgtaaagat |
35277959 |
T |
|
| Q |
219 |
ggttgccagaatcttgtcttagctgtgacaatgacagcattattagttgatgtggtccttgcttgagatctttccggtttggtagcctgaaaaatcataa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35277958 |
ggttgccagaatcttgtcttagctgtgacaatgacagcattattagttgatgtggtccttccttgagatctttccggtttggtagcctgaaaaatcataa |
35277859 |
T |
|
| Q |
319 |
cagttacaaacacagcatggtttaaaattgcggtccgcaactgcaattgcagccgtaatataaagaattttgaggttccggttccacaacaacattgcag |
418 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35277858 |
cagttacaaacatagcatggtttaaaattgcggtccgcaactgcaattgcagccgtaatataaagaattttgaggttccggttccacaacaacattgcag |
35277759 |
T |
|
| Q |
419 |
ccataatttcgaccacatttaaaagaaaaggaaaattatgttgtatcaaactccgaaacaatctaatcaaaccttcatgtatataaatagtgaaatatat |
518 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35277758 |
ccataatttcgaccacattaaaaagaaaaggaaaattatgttgtatcaaactccgaaacaatctagtcaaaccttcatgtatataaatagtgaaatatat |
35277659 |
T |
|
| Q |
519 |
ttgaatt-------------caatcatttaaaataacccaatgataaaatctactgtttgcaaaaataatgtttatagaccaaacttgattgctataact |
605 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35277658 |
ttgaattcaatttacaaattcaatcatttaaaataacccaatgataaaatctactgtttgcaaaaataatgtttatagaccaaacttgattgctataact |
35277559 |
T |
|
| Q |
606 |
atagaaacaaaaacaaataaaaacatggattagatttaccttattgtcctttg |
658 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35277558 |
atagaaacaaagacaaataaaaacatggtttagatttaccttattgtcctttg |
35277506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 26263660 - 26263720
Alignment:
| Q |
334 |
catggtttaaaattgcggtccgcaactgcaattgcagccgtaatataaagaattttgaggt |
394 |
Q |
| |
|
|||||||||||||| |||||| |||||||| ||||| || ||||| ||| |||||||||| |
|
|
| T |
26263660 |
catggtttaaaatttcggtccacaactgcatttgcaccctcaatatgaaggattttgaggt |
26263720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University