View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19612_low_20 (Length: 294)
Name: NF19612_low_20
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19612_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 27451787 - 27451510
Alignment:
| Q |
1 |
tattttgcacttgttaagcctctccgctacttgcacatttcttctgtgacatgattttgtgtcaactatttttcttgatagaggacatgaggcagtgatg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27451787 |
tattttgcacttgttaagcctctccactacttgcacatttcttcggtgacatgattt-gtgtcaactatttttcttgatagaggacatgaggcagtgatg |
27451689 |
T |
|
| Q |
101 |
ttgttttcagcttttaaatcagacaacagggtgaagagccttattactggcaaggtgtttcattatctgtttgaaaataccattgtggtccattctacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27451688 |
ttgttttcagcttttaaatcagacaacagggtgaagagccttattactggcaaggtgtttcattatctgtttgaaaataccattgtggtccattgtacag |
27451589 |
T |
|
| Q |
201 |
atactggttatgcagccatgacgaggctcttctcttctgcctcttgtttgagaaaaaggtgaatctgagccttcctatg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27451588 |
atactggttatgcagccatgacgaggctcttctcttctgcctcttgtttgagaaaaaggtgaatctgagccttcctatg |
27451510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 6 - 273
Target Start/End: Complemental strand, 27480643 - 27480379
Alignment:
| Q |
6 |
tgcacttgttaagcctctccgctacttgcacatttcttctgtgacatgattttgtgtcaactatttttcttgatagaggacat---gaggcagtgatgtt |
102 |
Q |
| |
|
|||| ||||||||| |||| | |||| |||||||||||| ||| |||||||| | | || || |||||||||| |||||| ||||| |||||||| |
|
|
| T |
27480643 |
tgcatttgttaagcttctctgttactcacacatttcttctatgatatgatttttt-tgaattacgtttcttgatataggacacaaggaggcggtgatgtt |
27480545 |
T |
|
| Q |
103 |
gttttcagcttttaaatcagacaacagggtgaagagccttattactggcaaggtgtttcattatctgtttgaaaataccattgtggtccattctacagat |
202 |
Q |
| |
|
|||||| ||||||||| | |||||| ||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27480544 |
gttttct-cttttaaatta---aacaggttgaagagtcttatcactggcaaggtgtttcagtatctgtttgaaaataccattgtggtccattctacaaat |
27480449 |
T |
|
| Q |
203 |
actggttatgcagccatgacgaggctcttctcttctgcctcttgtttgagaaaaaggtgaatctgagcctt |
273 |
Q |
| |
|
|||||| | |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27480448 |
actggtaacacagccatggtgaggcacttctcttctgcctcttgtttgag-aaaaggtgaatctgagcctt |
27480379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 96 - 272
Target Start/End: Complemental strand, 27481952 - 27481776
Alignment:
| Q |
96 |
tgatgttgttttcagcttttaaatcagacaacagggtgaagagccttattactggcaaggtgtttcattatctgtttgaaaataccattgtggtccattc |
195 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| || ||||||| | ||||||||||||||| || ||| ||||||||||||||||||| | ||||| |
|
|
| T |
27481952 |
tgatgttgttttcagcttttagatcaaacaacaggttggagagcctaagtactggcaaggtgttacagtattggtttgaaaataccattgtgattcattc |
27481853 |
T |
|
| Q |
196 |
tacagatactggttatgcagccatgacgaggctcttctcttctgcctcttgtttgagaaaaaggtgaatctgagcct |
272 |
Q |
| |
|
|||| |||||| | | ||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
27481852 |
tacatatactgataacgcagccatggtgaggctcttctcttctgcctattgtttgagaaaagggtgaatctgagcct |
27481776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 96 - 276
Target Start/End: Complemental strand, 27452994 - 27452816
Alignment:
| Q |
96 |
tgatgttgttttcagcttttaaatcagacaacagggtgaagagccttattactggcaaggtgtttcattatctgtttgaaaataccattgtggtccattc |
195 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| |||||||| || ||||||||||||||| || ||||||||||||||||| ||||||| |||| |
|
|
| T |
27452994 |
tgatgttgtttttagcttttagatcagacaacaggttgaagagc--tagtactggcaaggtgttccagaatctgtttgaaaatacctttgtggttaattc |
27452897 |
T |
|
| Q |
196 |
tacagatactggttatgcagccatgacgaggctcttctcttctgcctcttgtttgagaaaaaggtgaatctgagccttcct |
276 |
Q |
| |
|
||||| ||||| | | ||||||||| ||| || ||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
27452896 |
tacaggtactgataacgcagccatggtgagacttttctcttctgccttttgttttagaaaaaggtgaatctgagccttcct |
27452816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 95 - 276
Target Start/End: Complemental strand, 27449614 - 27449430
Alignment:
| Q |
95 |
gtgatgttgttttcagcttttaaatcagacaacagggtgaagagccttattactggcaaggtgtttcattatctgtttgaaaatacca---ttgtggtcc |
191 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| ||| ||||||||||| ||||||||||||| |||| | ||||||||||||||||| ||||||| |
|
|
| T |
27449614 |
gtgatgttgttttctacttttagatcagacaagaggttgaagagccttggtactggcaaggtgattcagtgtctgtttgaaaataccactgttgtggttt |
27449515 |
T |
|
| Q |
192 |
attctacagatactggttatgcagccatgacgaggctcttctcttctgcctcttgtttgagaaaaaggtgaatctgagccttcct |
276 |
Q |
| |
|
|||||| |||||||| | |||||||||| |||| | ||||||||| ||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
27449514 |
attctatagatactgataccgcagccatgatgaggtttttctcttcttcctcttgtttgtgaaaaaggtgaatctgagcattcct |
27449430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 273
Target Start/End: Complemental strand, 27485894 - 27485802
Alignment:
| Q |
183 |
ttgtggtccattctacagatactggttatgcagccatgacgaggctcttctcttctgcctcttgtttgaga--aaaaggtgaatctgagcctt |
273 |
Q |
| |
|
||||||| |||||||||||| || | ||||||||||| | |||||||||||| |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
27485894 |
ttgtggtttattctacagatattgataatgcagccatgttaatgctcttctcttcggcctattgtttgagaaaaaaaggtgaatctgagcctt |
27485802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 27483485 - 27483397
Alignment:
| Q |
71 |
tttcttgatagaggaca---tgaggcagtgatgttgttttcagcttttaaatcagacaacagggtgaagagccttattactggcaaggt |
156 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||| |||||||||||| ||| ||||| ||| ||||||| |||| || ||||||||| |
|
|
| T |
27483485 |
tttcttgatagaagacacaatggggcagtgatgttgctttcagcttttagatccgacaataggttgaagagtcttagtattggcaaggt |
27483397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 27486003 - 27485974
Alignment:
| Q |
87 |
atgaggcagtgatgttgttttcagctttta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27486003 |
atgaggcagtgatgttgttttcagctttta |
27485974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 273
Target Start/End: Complemental strand, 27489345 - 27489263
Alignment:
| Q |
195 |
ctacagatactggttatgcagccatgacgaggctcttctcttctgcctcttgtttgaga----aaaaggtgaatctgagcctt |
273 |
Q |
| |
|
||||||||| || | ||||||||||| |||||||| ||||| |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
27489345 |
ctacagatattgctaatgcagccatgtttaggctcttatcttcggcctattgtttgagaaaaaaaaaggtgaatctgagcctt |
27489263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University