View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19612_low_21 (Length: 278)
Name: NF19612_low_21
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19612_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 8628444 - 8628529
Alignment:
| Q |
22 |
atgcaagttatgatgtttccacgaactccacacatggttcacagcaaaaatattgtattgtgacaatgatattaatgacttgctat |
107 |
Q |
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| T |
8628444 |
atgcaagttatgatgtttccacaaactccacacatggttcacaacaaaaatattgtattgtgacaatgatattaatgacttgctat |
8628529 |
T |
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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 264
Target Start/End: Original strand, 8628565 - 8628641
Alignment:
| Q |
188 |
atcttttacacaatcgaatcaacacaaaacataaaacatagtgtatgaaattttatggttaaccatagtagtataat |
264 |
Q |
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| T |
8628565 |
atcttctacacaatcgaatcaatataaaacacacaacgtagtgtatgaaattttatggttaaccataataatataat |
8628641 |
T |
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