View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19612_low_25 (Length: 242)
Name: NF19612_low_25
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19612_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 38850864 - 38850647
Alignment:
| Q |
11 |
tgagatgaattgttgtttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactg |
110 |
Q |
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| T |
38850864 |
tgaggtgaattgttgtttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactg |
38850765 |
T |
|
| Q |
111 |
caactatcatcacaacatttgaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38850764 |
caactatcatcacaacatttgaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattg |
38850665 |
T |
|
| Q |
211 |
ataatcaattggattttg |
228 |
Q |
| |
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| |||||||||||||||| |
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| T |
38850664 |
aaaatcaattggattttg |
38850647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 38841075 - 38841282
Alignment:
| Q |
22 |
gttgtttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatc |
121 |
Q |
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|||||| |||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |
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| T |
38841075 |
gttgttgatggctacgtttgaaaaccttaaggcacacctgataatggagtttaatgcaagtgagcaaataaaaacacataatatgactgcaagtatcatc |
38841174 |
T |
|
| Q |
122 |
acaacatttgaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattgataatcaattg |
221 |
Q |
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| T |
38841175 |
acaacttttgaatcaaattcacgatctccaaaatttgagtctgttgaattatggttgtttgttaaagtaggggagttggttagtgattgatgatcaactg |
38841274 |
T |
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| Q |
222 |
gattttga |
229 |
Q |
| |
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| |||||| |
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| T |
38841275 |
ggttttga |
38841282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 228
Target Start/End: Original strand, 38827290 - 38827496
Alignment:
| Q |
22 |
gttgtttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatc |
121 |
Q |
| |
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|||||||| ||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||||||| |||||| ||||| ||||||| ||||||| |
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| T |
38827290 |
gttgtttagggctacgttagaaaaccttaaggcgcaccttatgatcgagtttaaggcaagtgagcaaataagagcacacaatagaactgcaagtatcatc |
38827389 |
T |
|
| Q |
122 |
acaacatttgaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattgataatcaattg |
221 |
Q |
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|||||||||| ||||||||||||| |||||||| ||||| |||||||| || |||| ||| | |||||||||||||||||||||||||||||||||| |
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| T |
38827390 |
acaacatttgcatcaaattcacgaattccaaaatatgagttagttgaattatggttgtgtgtgagaacaggggagctggttggtgattgataatcaattg |
38827489 |
T |
|
| Q |
222 |
gattttg |
228 |
Q |
| |
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||||||| |
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| T |
38827490 |
gattttg |
38827496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 222
Target Start/End: Original strand, 38865121 - 38865324
Alignment:
| Q |
22 |
gttgtttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatc |
121 |
Q |
| |
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||||| || ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||| |||||| |
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| T |
38865121 |
gttgtgtagggctacgttagaaaaccttaaaccacaccttatgatggagtttaatgcaagtgagcaaataagagcacacaataaaactgcaagtatcatt |
38865220 |
T |
|
| Q |
122 |
acaacatttgaatcaaattcacgagctccaaaatttgagtctgttgaatt---gtgattgtttgttaacacaggggagctggttggtgattgataatcaa |
218 |
Q |
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| |||||||||||| ||||||||||||||||||| ||||||||||||||| || ||| |||||||| ||| ||||| | ||| ||||||||| |||| |
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| T |
38865221 |
ataacatttgaatcgaattcacgagctccaaaatatgagtctgttgaattatggttattatttgttaaaacatgggagttagttagtgattgatgttcaa |
38865320 |
T |
|
| Q |
219 |
ttgg |
222 |
Q |
| |
|
|||| |
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|
| T |
38865321 |
ttgg |
38865324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 38858822 - 38858979
Alignment:
| Q |
37 |
gtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatca |
136 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||||||| ||||| | |||||||||||||||||||| ||||||| |||||||||||||| ||||||| |
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| T |
38858822 |
gtttgaaatccttaagaaacaccttatgatggagtttaatacaagtaaacaaataaaagcacataatagaactgcaattatcatcacaacatctgaatca |
38858921 |
T |
|
| Q |
137 |
aattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacagggg |
194 |
Q |
| |
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|||||||||||||| || |||||||| |||||||||| ||||| || || ||||||| |
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| T |
38858922 |
aattcacgagctccgaactttgagtcggttgaattgttgttgttcgtgaaaacagggg |
38858979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 38846919 - 38847046
Alignment:
| Q |
52 |
ggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatcaaattcacgagctcca |
151 |
Q |
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||||||||||| |||||||||||||||| ||||||||||| |||||| |||||||| | ||||||||||||||||||||| ||||| |||||||||||| |
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| T |
38846919 |
ggcacaccttacaatggagtttaatgcaattgagcaaataatagcacacaataggacagaaactatcatcacaacatttgattcaaactcacgagctcca |
38847018 |
T |
|
| Q |
152 |
aaatttgagtctgttgaattgtgattgt |
179 |
Q |
| |
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|||| |||| |||||||||| ||||| |
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| T |
38847019 |
aaatacgagttagttgaattgttattgt |
38847046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 38861716 - 38861842
Alignment:
| Q |
48 |
ttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatcaaattcacgagc |
147 |
Q |
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||||||||| ||||||||| ||||||||||||| | | ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |
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| T |
38861716 |
ttaaggcacgccttatgataaagtttaatgcaaggggaccaataaaagcacataatacaactgcaagtatcatcacaacatttgaatcaaattcaggagc |
38861815 |
T |
|
| Q |
148 |
tccaaaatttgagtctgttgaattgtg |
174 |
Q |
| |
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|| ||||| |||||| ||||||||||| |
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| T |
38861816 |
tctaaaatatgagtcggttgaattgtg |
38861842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 43666311 - 43666401
Alignment:
| Q |
48 |
ttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatcaaa |
138 |
Q |
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|||| |||||||||||||| ||||| || |||||| ||||||| ||||||||||||||| | | || ||| |||||||||| |||||| |
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| T |
43666311 |
ttaatgcacaccttatgattgagttcaaacaaagtgaacaaataagagcacataataggacagagagtaccataacaacatttgcatcaaa |
43666401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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