View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19612_low_3 (Length: 611)
Name: NF19612_low_3
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19612_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 17 - 605
Target Start/End: Complemental strand, 41473175 - 41472591
Alignment:
| Q |
17 |
aaaattgaggcaatctgggagcataagtattgttttctagacagctactatcattctctatttttgtttttgacattgtaggttctattatattggaaac |
116 |
Q |
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| T |
41473175 |
aaaattgaggcaatctgggagcataagtattgttttctagacagctactatcattctctatttttgtttttgacattgtaggttcttttatattggaaac |
41473076 |
T |
|
| Q |
117 |
gtttatttcgaccctagatttttgttatgatacttttatccctcaagtgtttcaaagaattgtcatgtgtattaaatgctactagtatacataaagttat |
216 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41473075 |
gtttatttcgactctagatttttgttatgatacttttatccctcaagagtttgaaagaattgtcatgtgtattaaatgctactagtatacataaagttat |
41472976 |
T |
|
| Q |
217 |
aaggacaacaatgaacattggcatttgctgcaaaacaacttattannnnnnncacctcaattagtatttctaattgtctatctaattgcatgtttctatt |
316 |
Q |
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| T |
41472975 |
aaggacaacaatgaacattggcatttgctgcaaaacaacttattatttttttcacctcaattagtatttctaattgtctatctaattgcatgtttctatt |
41472876 |
T |
|
| Q |
317 |
aaccactgttnnnnnnnnnttactattgagtttaatgatctttccatctatgctctttaactaatttctaagacaaatatggtgaataggaccaaaccat |
416 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41472875 |
aaccactgtt-caaaaaaattactattgagtttaaagatctttccatctatgctctttaactaatttctaagacaaatacggtgaataggaccaaaccat |
41472777 |
T |
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| Q |
417 |
gatactttatgctttagaacttcagacattgagaatgactttctgttttagaggtttagattttgagaatgtgtttgcatttatattaatcgattgatta |
516 |
Q |
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| T |
41472776 |
gatactttatgctttagaacttcagacattgagaacgactttctgttttagaggtttagatattgagaatgtgtttgcatttatattaatcgattgatt- |
41472678 |
T |
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| Q |
517 |
tgatgatgtctttgtaaatatagcaagattcaaatgcgtacaagttgtgtcaatttagtagcaagagctccacgttgaagaattatcta |
605 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41472677 |
--atgatgtctttgtaaatatagcaagattcaaacgcgtacaagttgtgtcaatttagtagcaagagctccacgttgaagaattatcta |
41472591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 4219439 - 4219549
Alignment:
| Q |
79 |
tttgtttttgacattgtaggttctattatattggaaacgtttatttcgaccctagatttttgttatgatacttttatccctcaagtgtttcaaagaattg |
178 |
Q |
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||||||| ||||||||||| ||||||||||| |||| |||||||| ||| ||||||| || ||| ||| ||||| || |||||||| |||||||| |
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| T |
4219439 |
tttgtttgtgacattgtagattctattatatctgaaatgtttatttggactttagatttctgctattctacctttatgccataagtgtttgaaagaatta |
4219538 |
T |
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| Q |
179 |
tcatgtgtatt |
189 |
Q |
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| T |
4219539 |
tcatgtgtatt |
4219549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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