View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19612_low_6 (Length: 507)

Name: NF19612_low_6
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19612_low_6
NF19612_low_6
[»] chr7 (9 HSPs)
chr7 (192-394)||(14820017-14820219)
chr7 (192-394)||(15267017-15267219)
chr7 (192-394)||(15273802-15274004)
chr7 (75-146)||(14819900-14819971)
chr7 (75-146)||(15266900-15266971)
chr7 (75-146)||(15273685-15273756)
chr7 (456-493)||(14820281-14820318)
chr7 (456-493)||(15267281-15267318)
chr7 (456-493)||(15274066-15274103)
[»] chr5 (3 HSPs)
chr5 (192-394)||(17502500-17502702)
chr5 (75-146)||(17502748-17502819)
chr5 (456-493)||(17502401-17502438)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-110; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 192 - 394
Target Start/End: Original strand, 14820017 - 14820219
Alignment:
Q  192 tgaacgtggatctggaatccttggcagaagccacttctggagccataggatcattgcttagcacaacaattctctaccctcttgatacctgcaagactaa 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14820017 tgaacgtggatctggaatccttggcagaagccacttctggagccataggatcattgcttagcacaacaattctctaccctcttgatacctgcaagactaa 14820116  T
Q  292 gtatcaagctgaggcacgttctaagggtaacagaaagtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgtta 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14820117 gtatcaagctgaggcacgttctaagggtaacagaaagtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgtta 14820216  T
Q  392 ccc 394  Q
    |||    
T  14820217 ccc 14820219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 192 - 394
Target Start/End: Original strand, 15267017 - 15267219
Alignment:
Q  192 tgaacgtggatctggaatccttggcagaagccacttctggagccataggatcattgcttagcacaacaattctctaccctcttgatacctgcaagactaa 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15267017 tgaacgtggatctggaatccttggcagaagccacttctggagccataggatcattgcttagcacaacaattctctaccctcttgatacctgcaagactaa 15267116  T
Q  292 gtatcaagctgaggcacgttctaagggtaacagaaagtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgtta 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15267117 gtatcaagctgaggcacgttctaagggtaacagaaagtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgtta 15267216  T
Q  392 ccc 394  Q
    |||    
T  15267217 ccc 15267219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 192 - 394
Target Start/End: Original strand, 15273802 - 15274004
Alignment:
Q  192 tgaacgtggatctggaatccttggcagaagccacttctggagccataggatcattgcttagcacaacaattctctaccctcttgatacctgcaagactaa 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15273802 tgaacgtggatctggaatccttggcagaagccacttctggagccataggatcattgcttagcacaacaattctctaccctcttgatacttgcaagactaa 15273901  T
Q  292 gtatcaagctgaggcacgttctaagggtaacagaaagtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgtta 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15273902 gtatcaagctgaggcacgttctaagggtaacagaaagtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgtta 15274001  T
Q  392 ccc 394  Q
    |||    
T  15274002 ccc 15274004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 14819900 - 14819971
Alignment:
Q  75 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14819900 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 14819971  T

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Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 15266900 - 15266971
Alignment:
Q  75 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15266900 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 15266971  T

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Target: chr7; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 15273685 - 15273756
Alignment:
Q  75 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15273685 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 15273756  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 456 - 493
Target Start/End: Original strand, 14820281 - 14820318
Alignment:
Q  456 ggtggtttccttgttattatcgattgttaagttgtttt 493  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14820281 ggtggtttccttgttattatcgattgttaagttgtttt 14820318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 456 - 493
Target Start/End: Original strand, 15267281 - 15267318
Alignment:
Q  456 ggtggtttccttgttattatcgattgttaagttgtttt 493  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15267281 ggtggtttccttgttattatcgattgttaagttgtttt 15267318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 456 - 493
Target Start/End: Original strand, 15274066 - 15274103
Alignment:
Q  456 ggtggtttccttgttattatcgattgttaagttgtttt 493  Q
    |||||||||||||||||||||||||||| |||||||||    
T  15274066 ggtggtttccttgttattatcgattgttgagttgtttt 15274103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 192 - 394
Target Start/End: Complemental strand, 17502702 - 17502500
Alignment:
Q  192 tgaacgtggatctggaatccttggcagaagccacttctggagccataggatcattgcttagcacaacaattctctaccctcttgatacctgcaagactaa 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17502702 tgaacgtggatctggaatccttggcagaagccacttctggagccataggatcattgcttagcacaacaattctctaccctcttgatacttgcaagactaa 17502603  T
Q  292 gtatcaagctgaggcacgttctaagggtaacagaaagtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgtta 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17502602 gtatcaagctgaggcacgttctaagggtaacagaaagtacaagtatgtttaacaaccctttgattattcattttatgatttcttgcttttgatcctgtta 17502503  T
Q  392 ccc 394  Q
    |||    
T  17502502 ccc 17502500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 17502819 - 17502748
Alignment:
Q  75 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17502819 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 17502748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 456 - 493
Target Start/End: Complemental strand, 17502438 - 17502401
Alignment:
Q  456 ggtggtttccttgttattatcgattgttaagttgtttt 493  Q
    |||||||||||||||||||||||||||| |||||||||    
T  17502438 ggtggtttccttgttattatcgattgttgagttgtttt 17502401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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