View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19612_low_9 (Length: 402)
Name: NF19612_low_9
Description: NF19612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19612_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 3 - 388
Target Start/End: Original strand, 5419412 - 5419797
Alignment:
| Q |
3 |
tttatacaatttcctaacatatggttcaatatatccaaacacaacactccaaattctcaacataatcccaaagatgatatctttccccaatttccttatc |
102 |
Q |
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| T |
5419412 |
tttatacaatttcctaacatatggttcaatatatccaaacacaacactccaaattctcaacataatcccaaagatgatatctttccccaatttccttatc |
5419511 |
T |
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| Q |
103 |
ccaaaaggatccataaagaataagcaacagcgaaacatgaaaaacaatggataggttataaacatgaaaattaacttaatttgaaactctaatgcgttaa |
202 |
Q |
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| T |
5419512 |
ccaaaaggatccataaagaataagcaacagcgaaacatgaaaaacaatggataagttataaacatgaaaattaacttaatttgaaactctaatgcgttaa |
5419611 |
T |
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| Q |
203 |
ttatcaatcctgctatcaattcgagaaaactcgaagatgaatcatggactcgtgacaccgagtcaacagaatcggaagctaaatcatcatttgtagctgt |
302 |
Q |
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| T |
5419612 |
ttatcaatcctgctatcaattcgagaaaactcgaagatgaatcatggagtcgtgacaccgagtcaatagaatcggaagctaaatcatcatttgtagctgt |
5419711 |
T |
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| Q |
303 |
agttattgtagattcttcgttgttctcttcaattgcgtgaattgaaggtggtgaagtgctaggttgtttctcggtgtaattttcat |
388 |
Q |
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| T |
5419712 |
agttattgtagattcttcgttgttctcttcaattgcgtgaattgaaggtggtgaagtgctaggttgtttctcggtgtaattttcat |
5419797 |
T |
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