View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_high_10 (Length: 454)
Name: NF19613_high_10
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 450
Target Start/End: Complemental strand, 39374516 - 39374094
Alignment:
| Q |
17 |
aaatacatactgcattatggagtatatgaataattggatggaccaagataattggttgcacgtcgtggcttatgaataataaagctctaggtaaatataa |
116 |
Q |
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| T |
39374516 |
aaatacatactgcattatggagtatatgaataattggatggaccaagataattggttgcacgtcgtggcttatgaataataaagctctaggtaaatataa |
39374417 |
T |
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| Q |
117 |
ggaggggagtctttcatttgtagagtgttgtttccttgcaagaaaagattaagcaccgcaatacatgactagagatcattcacctacctagtgagtggag |
216 |
Q |
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| T |
39374416 |
ggaggggagtctttcatttgtagagtgttgtttccttgcaagaaaa---------------tacatgactagagatcattcacctacctagtgagtggag |
39374332 |
T |
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| Q |
217 |
aacatgtattgctctctaaaaacacacacttagagcatatttggtcacttattaaattactaactttgaatttttcatcaatgcacacgtcc-tacaata |
315 |
Q |
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| T |
39374331 |
aacatgtattgctatctaaaaacacacacttagagcatatttggtcacttattaaattactaactttgaatttttcatcaatgcacacgtccctacaata |
39374232 |
T |
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| Q |
316 |
ataataataat---tataagatgtaggatatgacatggatgcacgataaaaccctgaattgcatgtcctaaataattattggattaaatcttcttttttc |
412 |
Q |
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| T |
39374231 |
ataataataataattataagatgtaggatatgacatggatgcacgataaaaccctgaattgcatgtcctaaataattattggattaaatcttcttttttc |
39374132 |
T |
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| Q |
413 |
tatgaatattgcatcatatccctactacatggccagct |
450 |
Q |
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| T |
39374131 |
tatgaatattggatcatatctctactacatggccagct |
39374094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 39382425 - 39382362
Alignment:
| Q |
335 |
gtaggatatgacatggatgcacgataaaaccctgaattgcatgtcctaaataattattggatta |
398 |
Q |
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| T |
39382425 |
gtaggatatgacatggatgcacgataacgacttgaattgcatgtcctaaccaattattggatta |
39382362 |
T |
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