View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19613_high_12 (Length: 438)
Name: NF19613_high_12
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 127 - 428
Target Start/End: Complemental strand, 7446360 - 7446059
Alignment:
| Q |
127 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7446360 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaatttttttaagactgaagtactcttcttcaagttt |
7446261 |
T |
|
| Q |
227 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7446260 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
7446161 |
T |
|
| Q |
327 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttggcactgttttctccacctt |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7446160 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttagcactgttttctccacctt |
7446061 |
T |
|
| Q |
427 |
tg |
428 |
Q |
| |
|
|| |
|
|
| T |
7446060 |
tg |
7446059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 127 - 428
Target Start/End: Complemental strand, 7461304 - 7461003
Alignment:
| Q |
127 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
226 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7461304 |
gaagaggaagaaagaggtataccttggtttcaaggagacacttctcaagaatggtggattcatgattttttttaagactgaagtactcttcttcaagttt |
7461205 |
T |
|
| Q |
227 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7461204 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
7461105 |
T |
|
| Q |
327 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttggcactgttttctccacctt |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7461104 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttagcactgttttctccacctt |
7461005 |
T |
|
| Q |
427 |
tg |
428 |
Q |
| |
|
|| |
|
|
| T |
7461004 |
tg |
7461003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7446483 - 7446419
Alignment:
| Q |
1 |
acactatagtaatataatattgttggaattaaaaaatttatgtctagttataatccaatcaactg |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
7446483 |
acactatagtaatataatattgttggaattaaaaaatttatgtcaagttataatccaatccactg |
7446419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University