View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_high_17 (Length: 351)
Name: NF19613_high_17
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 834440 - 834780
Alignment:
| Q |
1 |
tacaaaaacatgattctactctcacagtgaaggataacaaacccaattttgattcttcaattaaata---tctgaaagaaagcaagcagtctgatactga |
97 |
Q |
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| T |
834440 |
tacaaaaacatgattctactctcacagtgaaggataacaaacccaattttgattcttcaattaaataatatctgaaagaaagcaagcagtctgatactga |
834539 |
T |
|
| Q |
98 |
attattgttaaatgatgaaactgtggatgtttcttcatctaaaaatgagttatcggaagagcgaaaggagcatatccgttat---tctgaaattcaatgc |
194 |
Q |
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| T |
834540 |
attattgttaaatgatggaactgtggatgtttcttcatctaaaaatgagttatcggaagagcaaaaggagcatatccgttataattctgaaattcaatgc |
834639 |
T |
|
| Q |
195 |
aaaaaagattttaccttcattgaaagaatcaatgggagagacataaatttgctgcagggtcttgaacttcacaccggtgtattcaatgctacggagcagg |
294 |
Q |
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| T |
834640 |
aaaaaagattttaccttcattgaaagaatcaatgggagagacataaatttgctgcagggtcttgaacttcacaccgatgttttcaatgctacggagcagg |
834739 |
T |
|
| Q |
295 |
atgaaattgttaagtatatatacagattgcaaaggagagga |
335 |
Q |
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| T |
834740 |
atgaaattgtcgagtatatatacggattgcaaaggagagga |
834780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 335
Target Start/End: Original strand, 812973 - 813091
Alignment:
| Q |
217 |
aaagaatcaatgggagagacataaatttgctgcagggtcttgaacttcacaccggtgtattcaatgctacggagcaggatgaaattgttaagtatatata |
316 |
Q |
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|||| ||||| || ||||| ||||||||| | |||||||||||||||||| | |||| |||||||||||||||||| ||||||||||| | |||||||| |
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| T |
812973 |
aaaggatcaacggaagagatataaatttgttagagggtcttgaacttcacagcagtgtcttcaatgctacggagcagaatgaaattgttgactatatata |
813072 |
T |
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| Q |
317 |
cagattgcaaaggagagga |
335 |
Q |
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| T |
813073 |
catattgcaacggagagga |
813091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34881731 - 34881692
Alignment:
| Q |
1 |
tacaaaaacatgattctactctcacagtgaaggataacaa |
40 |
Q |
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| T |
34881731 |
tacaaaaacatgattctattctcacaatgaaggataacaa |
34881692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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