View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_high_19 (Length: 348)
Name: NF19613_high_19
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_high_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 348
Target Start/End: Original strand, 40158613 - 40158952
Alignment:
| Q |
10 |
aagaatatcagcagcaatgcaaaaaacaacctttcataaaaaattgggaacctctatagcactgacacttctgatcgaatacatttcaagtgtccgccac |
109 |
Q |
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| T |
40158613 |
aagaaaatcagcagcaatgcaaaaaacaacctttcataaaaaattgggaacctctatagcactgacacttctaatcgaatacatttcaagtgtccgacac |
40158712 |
T |
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| Q |
110 |
agacacatgtgattccatttattatattattttctcaaataagtat-agtgtaatgtctagtgttcgtgtctgtgtcagtgctgcatagttgggaacgca |
208 |
Q |
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| T |
40158713 |
agacacatgtgattccatttattatattgttttctcaaataagtatcagtgtaatgtctagtgttcgtgtctgtgtcagtgctgcatagttgggaacaca |
40158812 |
T |
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| Q |
209 |
gtattgatgcacaaatcaacggtaatgcaaaatacaacctttcnnnnnnnnnnnnnttgcgaacctctgtagcaccgacacttctgatcaaagacgtttc |
308 |
Q |
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| T |
40158813 |
gtattgatgcacaaatcaacggtaatgcaaaatacaacctttcaaaaaataaaaaattgcgaacctctgtagcaccgacactcctaatcaaagacgtttc |
40158912 |
T |
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| Q |
309 |
aggtatcagacatgtgtcaagtgtccgacactgacacatg |
348 |
Q |
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| T |
40158913 |
aggtatcagacatgtgtcaagtgtccgacactgacacatg |
40158952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 40158360 - 40158404
Alignment:
| Q |
47 |
aaaaaattgggaacctctatagcactgacacttctgatcgaatac |
91 |
Q |
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| T |
40158360 |
aaaaaattgggagcctctatagcaccgacacttctgatcaaatac |
40158404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 18263605 - 18263564
Alignment:
| Q |
271 |
acctctgtagcaccgacacttctgatcaaagacgtttcaggt |
312 |
Q |
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| T |
18263605 |
acctctgtagcaccgacacttctgatcgaagacgtgtcaggt |
18263564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 38873128 - 38873161
Alignment:
| Q |
271 |
acctctgtagcaccgacacttctgatcaaagacg |
304 |
Q |
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| T |
38873128 |
acctctgtagcaccgacacttctgatcgaagacg |
38873161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 305
Target Start/End: Complemental strand, 41427767 - 41427738
Alignment:
| Q |
276 |
tgtagcaccgacacttctgatcaaagacgt |
305 |
Q |
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| T |
41427767 |
tgtagcaccgacacttctgatcaaagacgt |
41427738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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