View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_high_22 (Length: 333)
Name: NF19613_high_22
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 39647734 - 39647982
Alignment:
| Q |
11 |
ttatactattaaggacgctcttttattagtaatatatctcatttttgcttgttcaaataataataatacttaacagggtcaaagaagnnnnnnnnnnnnn |
110 |
Q |
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| T |
39647734 |
ttatattattaaggacgctcgtttattagtaatatatctcatttttgtttgttcaaataataataatacttaacagggtcaaagaagttttttatttttt |
39647833 |
T |
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| Q |
111 |
nncggggagggttaaagaagtttaattccctataaataatattgaaaatgaaggacttcattcgaccgacaatgagtggcgcgtttgttagtatcataca |
210 |
Q |
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| T |
39647834 |
ttcgaggagggttaaagaagtttaattccctataaataatattgaaaatgaaggacttcattcgaccgataatgagtggcgcgtttgtttgtttcataca |
39647933 |
T |
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| Q |
211 |
tattaagataaaactaaaagaaagagaataataaaattttacaaaataa |
259 |
Q |
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| T |
39647934 |
tattaagataaaactaaaagaaagagaataataaaattttacaaaataa |
39647982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 39651235 - 39651293
Alignment:
| Q |
259 |
aagtttcgaagtacttcttttggactaaaaatgtaaagttgaagtcttgaagatattga |
317 |
Q |
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| T |
39651235 |
aagtttcgaagtacttcttctggactaaaaatgtaaagttgaagtcttgaagatattga |
39651293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 2365044 - 2365011
Alignment:
| Q |
39 |
gtaatatatctcatttttgcttgttcaaataata |
72 |
Q |
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| T |
2365044 |
gtaatatatctcatttttgcttgttcaaaaaata |
2365011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 18651874 - 18651902
Alignment:
| Q |
39 |
gtaatatatctcatttttgcttgttcaaa |
67 |
Q |
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| T |
18651874 |
gtaatatatctcatttttgcttgttcaaa |
18651902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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