View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_high_3 (Length: 619)
Name: NF19613_high_3
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 35 - 394
Target Start/End: Original strand, 8451377 - 8451736
Alignment:
| Q |
35 |
ttttgatggggtaggggatgtaatggaacaaatagacataggaaattggaatgatgaattagaaggcatggaagaacaagctgaagctagagaggaaacc |
134 |
Q |
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| T |
8451377 |
ttttgatggggtaggggatgtaatggaacaaatagatataggaaattggaatgatgaattagaaggcatggaagaacaagctgaagctagagaggaaacc |
8451476 |
T |
|
| Q |
135 |
ataccaaagttaagagccaaaaggaatgctattcataagtaagcattatcaacaatataagtagaatttctcaaccttcaccatagggacaaggtaatct |
234 |
Q |
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| T |
8451477 |
ataccaaagttaagagccaaaaggaatgctattcataagtaagcattatcaacaatataagtagaatttctcaaccttcaccatagggacaaggtaatct |
8451576 |
T |
|
| Q |
235 |
agtgctacctcaggtttaacattatgcatgagcaaatgcatatgaatcaaacaagtgttgcatatcatacagcaagaaatttcaaaacagtatcatagta |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8451577 |
agtgctacctcaggtttaacattatgcatgagcaaatgcatatgaatcaaacaagtgttgcatatcatacagcaagaaatttcaaaacagtatcatagta |
8451676 |
T |
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| Q |
335 |
ctctccaacatgtgcataagaaagaagcaatgattacattccatgaaaccttgctccttc |
394 |
Q |
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| T |
8451677 |
ctctccaacatgtgcataagaaagaagcaatgattacattccatgaaaccttgctccttc |
8451736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 172 - 394
Target Start/End: Complemental strand, 8480025 - 8479789
Alignment:
| Q |
172 |
agtaagcattatcaacaatataagtagaatttctcaaccttcaccatagggacaaggtaatctagtgctacctcaggtttaacattatgcatg------- |
264 |
Q |
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| T |
8480025 |
agtaaacattatcaacaacataagtagaatttctcaaccttcaccatagggacaagataatccagtgctgcctcagatttaacattatgcatggcaaaat |
8479926 |
T |
|
| Q |
265 |
-------agcaaatgcatatgaatcaaacaagtgttgcatatcatacagcaagaaatttcaaaacagtatcatagtactctccaacatgtgcataagaaa |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||| | |||||||| |
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| T |
8479925 |
aatggtgagcaaatgcatatgaatcaaacaagtgttgcatatcatacaccgagaaatttcaaaacagtatcatagtactccccaacatggggataagaaa |
8479826 |
T |
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| Q |
358 |
gaagcaatgattacattccatgaaaccttgctccttc |
394 |
Q |
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| T |
8479825 |
gaagcaatgattacattccatgaaaccttgctccttc |
8479789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 435 - 599
Target Start/End: Original strand, 8451736 - 8451901
Alignment:
| Q |
435 |
ctctctattattgaaagttttttatgtgggactttttgtctactgtgagtatgctattgccagatttattaaataatatcatacaatccgccaaaagtga |
534 |
Q |
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| T |
8451736 |
ctctctattattgaaagtttttgatgtgggactttttgtctactgtgagtatgctattgccagatttattaa-----atcatacaatccgccaaaagtga |
8451830 |
T |
|
| Q |
535 |
aatgtacggagaatgcctcaacaacaa------tacgcattcaacttctttcctcaataatgaaggtatca |
599 |
Q |
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| T |
8451831 |
aatgtacggagaatgcctcaataacaatatttgtacgcactcaacttctttcctcaataatgaaggtatca |
8451901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 284 - 399
Target Start/End: Original strand, 8411976 - 8412088
Alignment:
| Q |
284 |
aacaagtgttgcatatcatacagcaagaaatttcaaaacagtatcatagtactctccaacatgtgcataagaaagaagcaatgattacattccatgaaac |
383 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8411976 |
aacaagtgttgcatatcatacaacaagaaatttcaaaacagtatcata---ctctcaatcatgtgcataagaaagaagcaatgaatacattccatgaaac |
8412072 |
T |
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| Q |
384 |
cttgctccttccttca |
399 |
Q |
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|||| |||||| |||| |
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| T |
8412073 |
cttgatccttctttca |
8412088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 8427753 - 8427670
Alignment:
| Q |
35 |
ttttgatggggtaggggatgtaatggaacaaatagacataggaaattggaatgatgaattag-aaggcatggaagaacaagctg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8427753 |
ttttgatggggtaggggatgtaatggaacaaatagatataggaaattggaatgatgaattagaaaggcatggaagaacaagctg |
8427670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 417 - 513
Target Start/End: Original strand, 8351114 - 8351211
Alignment:
| Q |
417 |
ttttataggcaacttacactctctattattgaaagttttttatgtgggactttttgtctactgtgagtatg-ctattgccagatttattaaataatat |
513 |
Q |
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| T |
8351114 |
ttttataggcaacttacactctctattgttgaaagttttcgatgtgggactttttgtctattgtgactatgcctattaccagatttattaaataatat |
8351211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 398 - 510
Target Start/End: Original strand, 8412374 - 8412493
Alignment:
| Q |
398 |
caacgatatattcgtttgattttataggcaacttacactctctattattgaaagttttttatgtgggactttttgtctactgtgag--------tatgct |
489 |
Q |
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| T |
8412374 |
caacgatatatgcgtt-gcttttataggcaacttacactctctattgttgaaagttttcgatgtgggactttttgtttactgtgagtttgtgactatgct |
8412472 |
T |
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| Q |
490 |
attgccagatttattaaataa |
510 |
Q |
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| T |
8412473 |
attgcgagatttattaaataa |
8412493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 8350721 - 8350762
Alignment:
| Q |
263 |
tgagcaaatgcatatgaatcaaacaagtgttgcatatcatac |
304 |
Q |
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| T |
8350721 |
tgagcaaatgcatatgaatcaaacaagttttgcatatcatac |
8350762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 8411941 - 8411975
Alignment:
| Q |
199 |
aatttctcaaccttcaccatagggacaaggtaatc |
233 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| |
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| T |
8411941 |
aatttctcaaccttcaccatagagacaaggtaatc |
8411975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 8415304 - 8415361
Alignment:
| Q |
333 |
tactctccaacatgtgcataagaaagaagcaatgattacattccatgaaaccttgctc |
390 |
Q |
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|||||| |||| || ||||||||||||| |||| |||||||||| || |||||||||| |
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| T |
8415304 |
tactcttcaacctgcgcataagaaagaatcaattattacattccttgcaaccttgctc |
8415361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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