View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_high_5 (Length: 568)
Name: NF19613_high_5
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 19 - 555
Target Start/End: Complemental strand, 3642256 - 3641708
Alignment:
| Q |
19 |
ttggttagtttattcgcatcaatatcctggtcatgttaactttggcactgatgatattcttgaatgaattgtcattgacgacttgtataacaattatgca |
118 |
Q |
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| T |
3642256 |
ttggttagtttattcgcatcaatatcctggtcatgttaactttggcactgatgatattcttgaatgaattgtcattgacgacttgtataacaattatgca |
3642157 |
T |
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| Q |
119 |
gtccttgtttacaagcctcaagagcatatacccttataccatacacagactgacatacagatggattttctgttacatgccttttagaattgtactatca |
218 |
Q |
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| T |
3642156 |
gtccttgtttacaagcctcaagagcatatacccttataccatacacagactgacatacagatggattttctgttacatgccttttagaattgtaccatca |
3642057 |
T |
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| Q |
219 |
tgtgttaatatgttgttgtaagagaatctaattgcaaatggacataacttacatcacaaatccaaatgtgaatatctctatgctgaaaaatgcctataat |
318 |
Q |
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| T |
3642056 |
tgtgttaatatgttgttgtaagagaatctaattgcaaatggacataacttacatcacaaatccaaatgtgaatatctctatgctgaaaaatgcctataat |
3641957 |
T |
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| Q |
319 |
ttactttatctatgtgatttaatgatatttgtatagattccttctagccaccaggtaacatcagtgaaaatat---atgaagtttgatccggtgacatcg |
415 |
Q |
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| T |
3641956 |
ttactttatctatgtgatttaatgttatttgtatagattccttctagccaccaggtaacatcagtgaaaatatatgatgaagtttgatccggtgacatcg |
3641857 |
T |
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| Q |
416 |
tgaatttgattcttgcaacaacacgttggccaaattttgacttcatttataa---------cttttgatacgatcctttctctctgtaaacactatatgg |
506 |
Q |
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| T |
3641856 |
tgaatttgattcttgtaacaacatgttggccaaattttgacttcatttataacttttgaaccttttgatacgatcctttctctctgtaaacattatatgg |
3641757 |
T |
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| Q |
507 |
ttagtctcttaaaattcattcagagtctgctgaattcagcaactgccct |
555 |
Q |
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| T |
3641756 |
ttagtctcttaaaattcattcagagtctgctgaattcagcaactgccct |
3641708 |
T |
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