View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19613_high_6 (Length: 519)
Name: NF19613_high_6
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 43206081 - 43205578
Alignment:
| Q |
1 |
gttaaaagagaaaattttccataacatgaggccgtatgtaaagnnnnnnngttgaatgaaatatgtaattagtaaatcattatttttgtcttaaaaattg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43206081 |
gttaaaagagcaaattttccataacatgaggcagtatgtaaagaaaaaa-gttgaatgaaatatgtaattagtaaatcattatttttgtcttaaaaattg |
43205983 |
T |
|
| Q |
101 |
taataatnnnnnnncttttgactgacactgttgtttaaaggcgattaatctcgatccgaaaacctctttaatgcataatgtgagttctctgctcacaatt |
200 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43205982 |
taataataaaaaaacttttgactgacatcgttgtttaaaggcgattaatctccatcgaaaaacctctttaatgcataatgtgagttctccgctcacaatt |
43205883 |
T |
|
| Q |
201 |
gaataattttcatcgatcagtataatctgttggacacataaggccttcaatcaaattttcttccacaagagaaagggattgaacccggaccacttggtta |
300 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43205882 |
gaataattttcatc----agaataatctgttggacacataaggccttcaatcaaattttcttccacaagagaaagggattgaacccagaccacttggtta |
43205787 |
T |
|
| Q |
301 |
aaggatgcaaaattacgaacattttaccccacaccccaacaattata--cccttacaaaccataaaaaa---tactaattttaacctttttaaaatcaca |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43205786 |
aaggatgcaaaattacgaacattttaccccacaccccaacaattatatacccttacaaaccataaaaaaaaatactaattttaacctttttaaaatcaca |
43205687 |
T |
|
| Q |
396 |
tccttccaccccatcatgtgtttccagacttgaaaatggttggcgagttttgaatcgtgagcggtatgtgttcatgtatattcatagcacatccccaacg |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43205686 |
cccttccaccccatcatgtgtttccagacttgaaaatggttggcaagttttgaattgtgagcggtatgtgttcatgtatattcatagcacatccccaacg |
43205587 |
T |
|
| Q |
496 |
tgaaaaatc |
504 |
Q |
| |
|
||||||||| |
|
|
| T |
43205586 |
tgaaaaatc |
43205578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 317 - 434
Target Start/End: Complemental strand, 2092903 - 2092780
Alignment:
| Q |
317 |
gaacattttaccccacaccccaacaattatacccttac------aaaccataaaaaatactaattttaacctttttaaaatcacatccttccaccccatc |
410 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||| ||||||| |||||||| ||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
2092903 |
gaacattttacctcacaccccgacaattatacccttacccctacaaaccatcaaaaatacctattttaaccttttcaaaatcacacccttccaccccatc |
2092804 |
T |
|
| Q |
411 |
atgtgtttccagacttgaaaatgg |
434 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2092803 |
atgtgtttccagacttgaaaatgg |
2092780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 437
Target Start/End: Original strand, 43205287 - 43205354
Alignment:
| Q |
372 |
aattttaaccttttt-aaaatcacatccttccacccc-atcatgtgtttccagacttgaaaatggttg |
437 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
43205287 |
aattataacctttttcaaaatcacacccttccacccccagcatgtgtttccagacttgaaaatggttg |
43205354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 44303319 - 44303267
Alignment:
| Q |
349 |
ccttacaaaccataaaaaatactaattttaacctttttaaaatcacatccttc |
401 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||||| ||||||| || ||||| |
|
|
| T |
44303319 |
ccttacaaaccatcataaataccaattttaacctttctaaaatcgcacccttc |
44303267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 435
Target Start/End: Original strand, 36806134 - 36806258
Alignment:
| Q |
319 |
acattttaccccacaccccaacaattatac-----ccttacaaaccataaaaaatactaattttaacctttttaaaatcacatccttccaccccatc--- |
410 |
Q |
| |
|
|||||||||||||||| ||||||||||| | | |||||| || |||||||| |||||||||||||| ||| ||||| |||||||||||||| |
|
|
| T |
36806134 |
acattttaccccacactccaacaattatccttccacactacaaataattaaaaataccaattttaaccttttcaaattcacacccttccaccccatcttg |
36806233 |
T |
|
| Q |
411 |
atgtgtttccagacttgaaaatggt |
435 |
Q |
| |
|
|||||||| ||| ||||||||||| |
|
|
| T |
36806234 |
ttgtgtttctagaattgaaaatggt |
36806258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 391
Target Start/End: Complemental strand, 50941525 - 50941457
Alignment:
| Q |
323 |
tttaccccacaccccaacaattatacccttacaaaccataaaaaatactaattttaacctttttaaaat |
391 |
Q |
| |
|
||||| ||||||| ||||||||||| || |||||| ||| ||||||| ||||||||||||||| |||| |
|
|
| T |
50941525 |
tttactccacacctcaacaattatatccctacaaatcatcaaaaatatcaattttaaccttttttaaat |
50941457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 391
Target Start/End: Complemental strand, 41362612 - 41362573
Alignment:
| Q |
352 |
tacaaaccataaaaaatactaattttaacctttttaaaat |
391 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
41362612 |
tacaaaccatcaaaaatactaattttaaccattttaaaat |
41362573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University