View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19613_high_7 (Length: 496)

Name: NF19613_high_7
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19613_high_7
NF19613_high_7
[»] chr1 (7 HSPs)
chr1 (16-482)||(9873724-9874190)
chr1 (387-450)||(21322575-21322638)
chr1 (387-438)||(32827723-32827774)
chr1 (398-450)||(622948-623000)
chr1 (383-450)||(52186918-52186985)
chr1 (406-450)||(3851722-3851766)
chr1 (395-447)||(29855934-29855986)
[»] chr6 (4 HSPs)
chr6 (387-450)||(2725850-2725913)
chr6 (398-450)||(23252896-23252948)
chr6 (396-450)||(33699307-33699361)
chr6 (394-450)||(2744118-2744173)
[»] chr8 (10 HSPs)
chr8 (387-449)||(38006564-38006626)
chr8 (396-450)||(22842156-22842210)
chr8 (394-450)||(12750161-12750217)
chr8 (394-450)||(33102111-33102167)
chr8 (112-169)||(235040-235097)
chr8 (112-169)||(711451-711508)
chr8 (112-169)||(872558-872615)
chr8 (114-169)||(748665-748720)
chr8 (114-169)||(804900-804955)
chr8 (387-435)||(8983689-8983737)
[»] chr4 (8 HSPs)
chr4 (400-450)||(52450179-52450229)
chr4 (387-449)||(24393608-24393670)
chr4 (112-169)||(51170299-51170356)
chr4 (387-450)||(33648198-33648261)
chr4 (396-450)||(53979022-53979076)
chr4 (395-436)||(21027922-21027963)
chr4 (393-425)||(29525708-29525740)
chr4 (398-450)||(36138944-36138995)
[»] chr3 (3 HSPs)
chr3 (385-450)||(35310436-35310501)
chr3 (394-450)||(20991558-20991614)
chr3 (102-172)||(17264212-17264282)
[»] chr7 (5 HSPs)
chr7 (394-452)||(21455303-21455360)
chr7 (394-450)||(3756381-3756437)
chr7 (394-433)||(9902185-9902224)
chr7 (391-449)||(10084615-10084672)
chr7 (398-450)||(33818960-33819012)
[»] chr2 (4 HSPs)
chr2 (384-450)||(6619999-6620065)
chr2 (394-450)||(33833457-33833512)
chr2 (394-434)||(44540666-44540706)
chr2 (398-450)||(13387327-13387379)
[»] chr5 (3 HSPs)
chr5 (394-450)||(37442614-37442669)
chr5 (379-450)||(9979681-9979752)
chr5 (394-450)||(34594662-34594717)


Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 482
Target Start/End: Complemental strand, 9874190 - 9873724
Alignment:
Q  16 caaaggcgtgaattttggctaatttggaatgtaacaatttgggttatttagaaaacaagaaatgagtggattttcaacaagctttgggagattgataata 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9874190 caaaggcgtgaattttggctaatttggcatgtaacaatttgggttatttagaaaacaagaaatgagtggattttcaacaagctttgggagattgataata 9874091  T
Q  116 tggtggatcaaattaaggtgatgtcttggtattgaagtttgagtagaatgaaaattgataagaagggattgactcacgaggtaatttcgttcttaaggag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9874090 tggtggatcaaattaaggtgatgtcttggtattgaagtttgagtagaatgaaaattgataagaagggattgactcacgaggtaatttcgttcttaaggag 9873991  T
Q  216 gtggagggctatagctgctgtttcgattttggtgcttattttcaatgctggtcgtaccttgctgtgggggctgttttggcgctatcatggggcatttgct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9873990 gtggagggctatagctgctgtttcgattttggtgcttattttcaatgctggtcgtaccttgctgtgggggctgttttggcgctatcatggggcatttgct 9873891  T
Q  316 gctgcctgttaccatagggccagcggtgactttgtgggattttgttagttggtaggtggtaattgcttatggagtaccgctcttctcccatctgttttta 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  9873890 gctgcctgttaccatagggccagcggtgactttgtgggattttgttagttggtaggcggtaattgcttctggagtaccgctcttctcccatctgttttta 9873791  T
Q  416 cttattcccgtcaaaatagccgaacgtgagttaacaagtgtgcttttgtactttgctttgtattttg 482  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  9873790 cttattcccgtcaaaatagccgaacgtaagttaacaggtgtgcttttgtactttgctttgtattttg 9873724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 450
Target Start/End: Complemental strand, 21322638 - 21322575
Alignment:
Q  387 gagtaccgctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    |||||| ||||||||||||||||||||| || | ||||||||||||||||||  ||||||||||    
T  21322638 gagtactgctcttctcccatctgtttttgctcaatcccgtcaaaatagccgagggtgagttaac 21322575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 32827723 - 32827774
Alignment:
Q  387 gagtaccgctcttctcccatctgtttttacttattcccgtcaaaatagccga 438  Q
    |||||| ||||||||||||||||||||| || ||||| ||||||||||||||    
T  32827723 gagtactgctcttctcccatctgtttttgctcattcctgtcaaaatagccga 32827774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 450
Target Start/End: Complemental strand, 623000 - 622948
Alignment:
Q  398 ttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    ||||||||||||||||| ||||| |||||||||||||| || | |||||||||    
T  623000 ttctcccatctgtttttgcttatccccgtcaaaatagctgagcctgagttaac 622948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 450
Target Start/End: Complemental strand, 52186985 - 52186918
Alignment:
Q  383 tatggagtaccgctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    |||||| |||||||||| ||| |||||||||| || | | || ||||||||||||| |||||||||||    
T  52186985 tatggaataccgctcttttcctatctgtttttgctcacttccatcaaaatagccgagcgtgagttaac 52186918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 450
Target Start/End: Original strand, 3851722 - 3851766
Alignment:
Q  406 tctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    ||||||||| || || ||||||||||||||||| |||||||||||    
T  3851722 tctgtttttcctcatccccgtcaaaatagccgagcgtgagttaac 3851766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 29855934 - 29855986
Alignment:
Q  395 ctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagtt 447  Q
    |||||| ||||||||||||| || |||||| ||||||||| ||| ||||||||    
T  29855934 ctcttcccccatctgtttttgctcattcccatcaaaatagtcgagcgtgagtt 29855986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 387 - 450
Target Start/End: Complemental strand, 2725913 - 2725850
Alignment:
Q  387 gagtaccgctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    |||||| ||||||||||||||||||||| || |||||||||||||||||||| |||||||||||    
T  2725913 gagtactgctcttctcccatctgtttttgctcattcccgtcaaaatagccgagcgtgagttaac 2725850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 450
Target Start/End: Complemental strand, 23252948 - 23252896
Alignment:
Q  398 ttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    |||||||||||| |||| || |||||||||||||||||||| |||||||||||    
T  23252948 ttctcccatctggttttgctcattcccgtcaaaatagccgagcgtgagttaac 23252896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 450
Target Start/End: Original strand, 33699307 - 33699361
Alignment:
Q  396 tcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    |||||||| |||||||||| ||| |||||||||||||||  || |||||||||||    
T  33699307 tcttctccaatctgtttttgcttgttcccgtcaaaataggtgagcgtgagttaac 33699361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 450
Target Start/End: Original strand, 2744118 - 2744173
Alignment:
Q  394 gctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    |||||||||| |||||||||| ||  |||||||||||||| | ||||||||||||||    
T  2744118 gctcttctcc-atctgtttttgctcgttcccgtcaaaataacagaacgtgagttaac 2744173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 449
Target Start/End: Complemental strand, 38006626 - 38006564
Alignment:
Q  387 gagtaccgctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaa 449  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||| ||| ||||||||||    
T  38006626 gagtaccgctcttctcccatctgtttttgctcattcccgttaaaatagtcgagcgtgagttaa 38006564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 396 - 450
Target Start/End: Original strand, 22842156 - 22842210
Alignment:
Q  396 tcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    ||||||||||||||||||| || |||||||||||||||| ||| |||||||||||    
T  22842156 tcttctcccatctgttttttctcattcccgtcaaaatagtcgagcgtgagttaac 22842210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 450
Target Start/End: Original strand, 12750161 - 12750217
Alignment:
Q  394 gctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    ||||||||||||||||||||| || || |||||| |||||||||| |||||||||||    
T  12750161 gctcttctcccatctgtttttcctcatccccgtccaaatagccgagcgtgagttaac 12750217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 33102167 - 33102111
Alignment:
Q  394 gctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    |||||||||  |||||||||| || |||||||||||||||||||| |||||||||||    
T  33102167 gctcttctcttatctgtttttgctcattcccgtcaaaatagccgagcgtgagttaac 33102111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 235040 - 235097
Alignment:
Q  112 aatatggtggatcaaattaaggtgatgtcttggtattgaagtttgagtagaatgaaaa 169  Q
    |||||||| || ||||| |||||||||||||||||||| |||||| ||| ||||||||    
T  235040 aatatggtagaccaaatcaaggtgatgtcttggtattggagtttgcgtataatgaaaa 235097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 711451 - 711508
Alignment:
Q  112 aatatggtggatcaaattaaggtgatgtcttggtattgaagtttgagtagaatgaaaa 169  Q
    |||||||| || ||||| |||||||||||||||||||| |||||| ||| ||||||||    
T  711451 aatatggtagaccaaatcaaggtgatgtcttggtattggagtttgcgtataatgaaaa 711508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 872558 - 872615
Alignment:
Q  112 aatatggtggatcaaattaaggtgatgtcttggtattgaagtttgagtagaatgaaaa 169  Q
    |||||||| || ||||| |||||||||||||||||||| |||||| ||| ||||||||    
T  872558 aatatggtagaccaaatcaaggtgatgtcttggtattggagtttgcgtataatgaaaa 872615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 748665 - 748720
Alignment:
Q  114 tatggtggatcaaattaaggtgatgtcttggtattgaagtttgagtagaatgaaaa 169  Q
    |||||| || ||||| |||||||||||||||||||| |||||| ||| ||||||||    
T  748665 tatggtagaccaaatcaaggtgatgtcttggtattggagtttgcgtataatgaaaa 748720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 804900 - 804955
Alignment:
Q  114 tatggtggatcaaattaaggtgatgtcttggtattgaagtttgagtagaatgaaaa 169  Q
    |||||| || ||||| |||||||||||||||||||| |||||| ||| ||||||||    
T  804900 tatggtagaccaaatcaaggtgatgtcttggtattggagtttgcgtataatgaaaa 804955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 8983689 - 8983737
Alignment:
Q  387 gagtaccgctcttctcccatctgtttttacttattcccgtcaaaatagc 435  Q
    |||||| ||||||||||||||||||||| | | |||| |||||||||||    
T  8983689 gagtactgctcttctcccatctgtttttgcctgttcctgtcaaaatagc 8983737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 450
Target Start/End: Complemental strand, 52450229 - 52450179
Alignment:
Q  400 ctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  52450229 ctcccatctgtttttactcattcccgtcaaaatagccgagcgtgagttaac 52450179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 449
Target Start/End: Original strand, 24393608 - 24393670
Alignment:
Q  387 gagtaccgctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaa 449  Q
    |||||||||||||||||||||||||||| || |||||| |||||||||  || ||||||||||    
T  24393608 gagtaccgctcttctcccatctgtttttgctcattcccatcaaaatagttgagcgtgagttaa 24393670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 51170356 - 51170299
Alignment:
Q  112 aatatggtggatcaaattaaggtgatgtcttggtattgaagtttgagtagaatgaaaa 169  Q
    ||||||||||| ||||| |||||||||||||||||||| |||||| || |||||||||    
T  51170356 aatatggtggaccaaatcaaggtgatgtcttggtattggagtttgcgttgaatgaaaa 51170299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 450
Target Start/End: Original strand, 33648198 - 33648261
Alignment:
Q  387 gagtaccgctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    |||||||| ||||||||||| | ||||| || |||||||||||||||| |||  ||||||||||    
T  33648198 gagtaccgttcttctcccatatatttttgctcattcccgtcaaaatagtcgagtgtgagttaac 33648261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 450
Target Start/End: Original strand, 53979022 - 53979076
Alignment:
Q  396 tcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    ||||| ||||||||||||| || ||||| || ||||||| |||||||||||||||    
T  53979022 tcttcccccatctgtttttgctcattcctgttaaaatagtcgaacgtgagttaac 53979076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 21027963 - 21027922
Alignment:
Q  395 ctcttctcccatctgtttttacttattcccgtcaaaatagcc 436  Q
    |||||||||||||||||||| || ||||| ||||||||||||    
T  21027963 ctcttctcccatctgtttttgctcattcctgtcaaaatagcc 21027922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 425
Target Start/End: Complemental strand, 29525740 - 29525708
Alignment:
Q  393 cgctcttctcccatctgtttttacttattcccg 425  Q
    |||||||||||||| ||||||||||||||||||    
T  29525740 cgctcttctcccatttgtttttacttattcccg 29525708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 450
Target Start/End: Original strand, 36138944 - 36138995
Alignment:
Q  398 ttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    ||||||||||||||||| || |||| ||||||||||  |||||||||||||||    
T  36138944 ttctcccatctgttttt-ctcattctcgtcaaaataagcgaacgtgagttaac 36138995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 450
Target Start/End: Complemental strand, 35310501 - 35310436
Alignment:
Q  385 tggagtaccgctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    ||||||||||||| |||||||||| ||||| || || ||||||||||||||||| |||||||||||    
T  35310501 tggagtaccgctcatctcccatctatttttgctcatccccgtcaaaatagccgagcgtgagttaac 35310436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 450
Target Start/End: Original strand, 20991558 - 20991614
Alignment:
Q  394 gctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    |||||||||||||||  |||| || |||||||||||||||||||| |||||||||||    
T  20991558 gctcttctcccatctaattttgctcattcccgtcaaaatagccgagcgtgagttaac 20991614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 17264282 - 17264212
Alignment:
Q  102 ggagattgataatatggtggatcaaattaaggtgatgtcttggtattgaagtttgagtagaatgaaaattg 172  Q
    |||||| |||||||||||||| ||| ||||||  ||||| | |||||| ||||||||||||| ||||||||    
T  17264282 ggagatggataatatggtggaacaagttaaggcaatgtcctagtattggagtttgagtagaaagaaaattg 17264212  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 452
Target Start/End: Original strand, 21455303 - 21455360
Alignment:
Q  394 gctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaacaa 452  Q
    ||||||||||||| |||||||||||||| |||||||||||| |||  ||||||||||||    
T  21455303 gctcttctcccat-tgtttttacttatttccgtcaaaatagtcgagtgtgagttaacaa 21455360  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 450
Target Start/End: Original strand, 3756381 - 3756437
Alignment:
Q  394 gctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    ||||||||||||| ||||||| || |||||||||||||||| |||  ||||||||||    
T  3756381 gctcttctcccatttgtttttgctcattcccgtcaaaatagtcgagtgtgagttaac 3756437  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 433
Target Start/End: Complemental strand, 9902224 - 9902185
Alignment:
Q  394 gctcttctcccatctgtttttacttattcccgtcaaaata 433  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  9902224 gctcttctcccatctgtttttgctcattcccgtcaaaata 9902185  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 449
Target Start/End: Original strand, 10084615 - 10084672
Alignment:
Q  391 accgctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaa 449  Q
    |||||||||||| ||||||||||| || ||||||||| |||||||| | ||||||||||    
T  10084615 accgctcttctctcatctgtttttgctcattcccgtc-aaatagccaagcgtgagttaa 10084672  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 450
Target Start/End: Complemental strand, 33819012 - 33818960
Alignment:
Q  398 ttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    |||| |||||||||||| || || ||||||||| ||| |||||||||||||||    
T  33819012 ttcttccatctgtttttgctcatccccgtcaaagtaggcgaacgtgagttaac 33818960  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 450
Target Start/End: Original strand, 6619999 - 6620065
Alignment:
Q  384 atggagtaccgctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    ||||||||| ||||||||| ||| ||||||| || ||||||||||||||||  || |||||||||||    
T  6619999 atggagtactgctcttctctcatttgtttttgctcattcccgtcaaaatagttgagcgtgagttaac 6620065  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 33833512 - 33833457
Alignment:
Q  394 gctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||| |||| ||||||    
T  33833512 gctcttctcccatctgtttttactcattcctgtc-aaatagccgagcgtgggttaac 33833457  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 434
Target Start/End: Original strand, 44540666 - 44540706
Alignment:
Q  394 gctcttctcccatctgtttttacttattcccgtcaaaatag 434  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  44540666 gctcttctctcatctgtttttgcttattcccgtcaaaatag 44540706  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 450
Target Start/End: Original strand, 13387327 - 13387379
Alignment:
Q  398 ttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    |||||||||||||||||  | |||||||||||||||| | | |||||||||||    
T  13387327 ttctcccatctgtttttcttcattcccgtcaaaatagtcaagcgtgagttaac 13387379  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 37442669 - 37442614
Alignment:
Q  394 gctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    |||||||| |||||||||||| || ||||||||| |||||||||| |||||||||||    
T  37442669 gctcttcttccatctgtttttgctcattcccgtc-aaatagccgagcgtgagttaac 37442614  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Complemental strand, 9979752 - 9979681
Alignment:
Q  379 tgcttatggagtaccgctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    ||||||| |||||| | |||||||||||||||||||  | ||||  |||||||||| ||| |||||||||||    
T  9979752 tgcttattgagtactgttcttctcccatctgtttttgttcattcatgtcaaaatagtcgagcgtgagttaac 9979681  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 450
Target Start/End: Original strand, 34594662 - 34594717
Alignment:
Q  394 gctcttctcccatctgtttttacttattcccgtcaaaatagccgaacgtgagttaac 450  Q
    ||||||||||||||| ||||| || ||||||||  |||||||||| |||||||||||    
T  34594662 gctcttctcccatcttttttttctcattcccgt-taaatagccgagcgtgagttaac 34594717  T

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