View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19613_high_9 (Length: 466)

Name: NF19613_high_9
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19613_high_9
NF19613_high_9
[»] scaffold0479 (1 HSPs)
scaffold0479 (56-456)||(12724-13124)
[»] chr3 (6 HSPs)
chr3 (25-318)||(12720987-12721280)
chr3 (365-456)||(12721282-12721373)
chr3 (104-218)||(12728064-12728178)
chr3 (235-366)||(12713244-12713368)
chr3 (375-424)||(12713497-12713546)
chr3 (152-212)||(12713094-12713153)
[»] scaffold0210 (5 HSPs)
scaffold0210 (25-318)||(3388-3681)
scaffold0210 (365-456)||(3295-3386)
scaffold0210 (235-366)||(11547-11671)
scaffold0210 (152-209)||(11699-11755)
scaffold0210 (375-424)||(11319-11368)
[»] chr5 (8 HSPs)
chr5 (235-364)||(16078747-16078876)
chr5 (235-366)||(16071692-16071823)
chr5 (248-366)||(16068420-16068537)
chr5 (375-424)||(7878746-7878795)
chr5 (100-156)||(16068241-16068297)
chr5 (165-217)||(16078671-16078723)
chr5 (64-93)||(7878411-7878440)
chr5 (180-229)||(16068300-16068349)
[»] scaffold0464 (3 HSPs)
scaffold0464 (108-192)||(13286-13370)
scaffold0464 (234-286)||(12127-12179)
scaffold0464 (277-320)||(12078-12121)
[»] chr7 (2 HSPs)
chr7 (235-304)||(3860425-3860494)
chr7 (235-299)||(3886951-3887015)


Alignment Details
Target: scaffold0479 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 56 - 456
Target Start/End: Complemental strand, 13124 - 12724
Alignment:
Q  56 agatacaagtatagaattcatgatgcaattcattcttcacgaaaatactgaatatgtacagagaaagagaaaagaatcttgatgaagtcattcatgaggt 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  13124 agatacaagtatagaattcatgatgcaattcattcttcacgaaaatactgaatatgtacagacaaaaagaaaagagtcttgatgaagtcattcatgaggt 13025  T
Q  156 acatgttctattgtttatgtcatatggtcacaattacaattgaggtaccttaaaaatactattgatatcacaatggcaattgtgtgatactcattttaat 255  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13024 acatgttctattgtttatgtcatatggtcaaaattacaattgaggtaccttaaaaatactattgatatcacaatggcaattgtgtgatactcattttaat 12925  T
Q  256 tatgattttacttcttcaggttgctgtacttttcgaaggccatgatgatctcattgatgggtttactaatttccttcctctacgtggctaatgatatata 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  12924 tatgattttacttcttcaggttgctgtacttttcgaaggccatgatgatctcattgatgggtttactaatttcgttcctctatgtggctaatgatatata 12825  T
Q  356 tgagcaattcagatcagtgtggaacgagaagaatcatctgcaaccaaagatatgatgaagtctgtgccgatggcaggtaataacagcttatcagtctcat 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12824 tgagcaattcagatcagtgtggaacgagaagaatcatctgcaaccaaagatatgatgaagtctgtgccgatggcaggtaataacagcttatcagtctcat 12725  T
Q  456 t 456  Q
    |    
T  12724 t 12724  T

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Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 25 - 318
Target Start/End: Original strand, 12720987 - 12721280
Alignment:
Q  25 tgactaaccgataataccttatacnnnnnnnagatacaagtatagaattcatgatgcaattcattcttcacgaaaatactgaatatgtacagagaaagag 124  Q
    |||||||| |||||||||||| ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  12720987 tgactaacagataataccttaaactttttttagatacaagtatagaattcatgatgcaattcattcttcacgaaaatactgaatatgtacagacaaaaag 12721086  T
Q  125 aaaagaatcttgatgaagtcattcatgaggtacatgttctattgtttatgtcatatggtcacaattacaattgaggtaccttaaaaatactattgatatc 224  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12721087 aaaagagtcttgatgaagtcattcatgaggtacatgttctattgtttatgtcatatggtcaaaattacaattgaggtaccttaaaaatactattgatatc 12721186  T
Q  225 acaatggcaattgtgtgatactcattttaattatgattttacttcttcaggttgctgtacttttcgaaggccatgatgatctcattgatgggtt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12721187 acaatggcaattgtgtgatactcattttaattatgattttacttcttcaggttgctgtacttttcgaaggccatgatgatctcattgatgggtt 12721280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 365 - 456
Target Start/End: Original strand, 12721282 - 12721373
Alignment:
Q  365 cagatcagtgtggaacgagaagaatcatctgcaaccaaagatatgatgaagtctgtgccgatggcaggtaataacagcttatcagtctcatt 456  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12721282 cagatcagtgtggaacgagaagaatcatctgcaaccattgatatgatgaagtctgtgccgatggcagctaataacagcttatcagtctcatt 12721373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 12728064 - 12728178
Alignment:
Q  104 tgaatatgtacagagaaagagaaaagaatcttgatgaagtcattcatgaggtacatgttctattgtttatgtcatatggtcacaattacaattgaggtac 203  Q
    |||||||||||||||||||| |||||| |||||| || ||||||| |||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||    
T  12728064 tgaatatgtacagagaaagaaaaaagagtcttgacgatgtcattcgtgaggtacttgttcaattgtttatgtcacatggtcacaattacaatagaggtac 12728163  T
Q  204 cttaaaaatactatt 218  Q
    |||||||||||||||    
T  12728164 cttaaaaatactatt 12728178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 235 - 366
Target Start/End: Original strand, 12713244 - 12713368
Alignment:
Q  235 ttgtgtgatactcattttaattatgattttacttcttcaggttgctgtacttttcgaaggccatgatgatctcattgatgggtttactaatttccttcct 334  Q
    |||||||||||||||||| ||||||||||||||| ||||||||| | ||||||| ||||| ||||||||||  ||||||       ||| ||||||||||    
T  12713244 ttgtgtgatactcattttgattatgattttactttttcaggttggtttactttttgaaggtcatgatgatcctattgat-------ctagtttccttcct 12713336  T
Q  335 ctacgtggctaatgatatatatgagcaattca 366  Q
    ||||||||||||||||||| ||||||||||||    
T  12713337 ctacgtggctaatgatataaatgagcaattca 12713368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 424
Target Start/End: Original strand, 12713497 - 12713546
Alignment:
Q  375 tggaacgagaagaatcatctgcaaccaaagatatgatgaagtctgtgccg 424  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  12713497 tggaacgagaaaaatcatctacaaccaaagatatgatgaagtctgtgccg 12713546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 12713094 - 12713153
Alignment:
Q  152 aggtacatgttctattgtttatgtcatatggtcacaattacaattgaggtaccttaaaaat 212  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||| |||||||||||||||    
T  12713094 aggtacgtgttctattgtttttgtcatatggtgacaattacaatt-aggtaccttaaaaat 12713153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 25 - 318
Target Start/End: Complemental strand, 3681 - 3388
Alignment:
Q  25 tgactaaccgataataccttatacnnnnnnnagatacaagtatagaattcatgatgcaattcattcttcacgaaaatactgaatatgtacagagaaagag 124  Q
    |||||||| |||||||||||| ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  3681 tgactaactgataataccttaaactttttttagatacaagtatagaattcatgatgcaattcattcttcacgaaaatactgaatatgtacagacaaaaag 3582  T
Q  125 aaaagaatcttgatgaagtcattcatgaggtacatgttctattgtttatgtcatatggtcacaattacaattgaggtaccttaaaaatactattgatatc 224  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  3581 aaaagagtcttgatgatgtcattcatgaggtacatgttctattgtttatgtcatatggtcataattacaattgaggtatcttaaaaatactattgatatc 3482  T
Q  225 acaatggcaattgtgtgatactcattttaattatgattttacttcttcaggttgctgtacttttcgaaggccatgatgatctcattgatgggtt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3481 acaatggcaattgtgtgatactcattttaattatgattttacttcttcaggttgctgtacttttcgaaggccatgatgatctcattgatgggtt 3388  T

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Target: scaffold0210; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 365 - 456
Target Start/End: Complemental strand, 3386 - 3295
Alignment:
Q  365 cagatcagtgtggaacgagaagaatcatctgcaaccaaagatatgatgaagtctgtgccgatggcaggtaataacagcttatcagtctcatt 456  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3386 cagatcagtgtggaacgagaagaatcatctgcaaccattgatatgatgaagtctgtgccgatggcagctaataacagcttatcagtctcatt 3295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 235 - 366
Target Start/End: Complemental strand, 11671 - 11547
Alignment:
Q  235 ttgtgtgatactcattttaattatgattttacttcttcaggttgctgtacttttcgaaggccatgatgatctcattgatgggtttactaatttccttcct 334  Q
    |||||||||||||||||| ||||||||||||||| ||||||||| | ||||||| ||||||||||||||||  ||||||       ||| ||||||||||    
T  11671 ttgtgtgatactcattttgattatgattttactttttcaggttggtttactttttgaaggccatgatgatcctattgat-------ctagtttccttcct 11579  T
Q  335 ctacgtggctaatgatatatatgagcaattca 366  Q
    ||||||||||||||||||| ||||||||||||    
T  11578 ctacgtggctaatgatataaatgagcaattca 11547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 11755 - 11699
Alignment:
Q  152 aggtacatgttctattgtttatgtcatatggtcacaattacaattgaggtaccttaaa 209  Q
    |||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  11755 aggtacgtgttctattgtttttgtcatatggtcacaattacaatt-aggtaccttaaa 11699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 424
Target Start/End: Complemental strand, 11368 - 11319
Alignment:
Q  375 tggaacgagaagaatcatctgcaaccaaagatatgatgaagtctgtgccg 424  Q
    |||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  11368 tggaacgagaaatatcatctacaaccaaagatatgatgaagtctgtgccg 11319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 235 - 364
Target Start/End: Original strand, 16078747 - 16078876
Alignment:
Q  235 ttgtgtgatactcattttaattatgattttacttcttcaggttgctgtacttttcgaaggccatgatgatctcattgatgggtttactaatttccttcct 334  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| |||||| |||||    
T  16078747 ttgtgtgatactcattttaattatgtttttacttcttcaggttgctgtgcttttcgaaggccacgatgacctcattgaagggtttacaaatttcattcct 16078846  T
Q  335 ctacgtggctaatgatatatatgagcaatt 364  Q
    || ||| |||| | ||||| ||| ||||||    
T  16078847 cttcgtcgctagtaatataaatgggcaatt 16078876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 366
Target Start/End: Original strand, 16071692 - 16071823
Alignment:
Q  235 ttgtgtgatactcattttaattatgattttacttcttcaggttgctgtacttttcgaaggccatgatgatctcattgatgggtttactaatttccttcct 334  Q
    |||||||||||||||||||||||  |||||| ||||||||||| || |||| || ||||||||||| ||||| ||||||||||||| | ||||||||||     
T  16071692 ttgtgtgatactcattttaattaatattttatttcttcaggtttctttactctttgaaggccatgaggatcttattgatgggtttattgatttccttccg 16071791  T
Q  335 ctacgtggctaatgatatatatgagcaattca 366  Q
      ||||||||| ||||||||||||||||||||    
T  16071792 taacgtggctagtgatatatatgagcaattca 16071823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 248 - 366
Target Start/End: Original strand, 16068420 - 16068537
Alignment:
Q  248 attttaattatgattttacttcttcaggttgctgtacttttcgaaggccatgatgatctcattgatgggtttactaatttccttcctctacgtggctaat 347  Q
    ||||| ||||||||||||||||||||||||||| |||| ||  |||| ||||||||||| ||| ||| |||| ||||||||||||| ||||||||||| |    
T  16068420 attttcattatgattttacttcttcaggttgctatactctttcaaggtcatgatgatcttattcatgagtttgctaatttccttcccctacgtggctagt 16068519  T
Q  348 gatatatatgagcaattca 366  Q
    |||||| ||||||||||||    
T  16068520 gatata-atgagcaattca 16068537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 424
Target Start/End: Original strand, 7878746 - 7878795
Alignment:
Q  375 tggaacgagaagaatcatctgcaaccaaagatatgatgaagtctgtgccg 424  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  7878746 tggaacgagaaaaatcatcagcaaccaaagatatgatgaagtcagtgccg 7878795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 16068241 - 16068297
Alignment:
Q  100 atactgaatatgtacagagaaagagaaaagaatcttgatgaagtcattcatgaggta 156  Q
    |||||| | ||||||||| ||| |||||||||||||||||||||||||| |||||||    
T  16068241 atactgcaaatgtacagacaaaaagaaaagaatcttgatgaagtcattcgtgaggta 16068297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 16078671 - 16078723
Alignment:
Q  165 attgtttatgtcatatggtcacaattacaattgaggtaccttaaaaatactat 217  Q
    |||||||||||||| |||||| ||||||||||||| |||| ||||||||||||    
T  16078671 attgtttatgtcatgtggtcaaaattacaattgagataccataaaaatactat 16078723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 93
Target Start/End: Original strand, 7878411 - 7878440
Alignment:
Q  64 gtatagaattcatgatgcaattcattcttc 93  Q
    ||||||||||||||||||||||||||||||    
T  7878411 gtatagaattcatgatgcaattcattcttc 7878440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 16068300 - 16068349
Alignment:
Q  180 tggtcacaattacaattgaggtaccttaaaaatactattgatatcacaat 229  Q
    |||||| ||| ||||||||| |||| |||||||||||||| |||||||||    
T  16068300 tggtcaaaatgacaattgagataccataaaaatactattgctatcacaat 16068349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 13370 - 13286
Alignment:
Q  108 tatgtacagagaaagagaaaagaatcttgatgaagtcattcatgaggtacatgttctattgtttatgtcatatggtcacaattac 192  Q
    ||||||||||||||||||||||| |||||| || || |||  |||| ||| ||||| ||| ||||||||||||||||||||||||    
T  13370 tatgtacagagaaagagaaaagagtcttgacgatgttatttgtgagatacgtgttcaattatttatgtcatatggtcacaattac 13286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 12179 - 12127
Alignment:
Q  234 attgtgtgatactcattttaattatgattttacttcttcaggttgctgtactt 286  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  12179 attgcgtgatactcattttaattatgattttactttttcaggttgctttactt 12127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 320
Target Start/End: Original strand, 12078 - 12121
Alignment:
Q  277 tgctgtacttttcgaaggccatgatgatctcattgatgggttta 320  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||    
T  12078 tgctttactttttgaaggccatgatgatcttattgatgggttta 12121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 3860425 - 3860494
Alignment:
Q  235 ttgtgtgatactcattttaattatgattttacttcttcaggttgctgtacttttcgaaggccatgatgat 304  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| | ||||||| |||||| ||| ||||    
T  3860425 ttgtgtgatcctcattataattatgattttacttcttcaggttggtttactttttgaaggcaatggtgat 3860494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 3886951 - 3887015
Alignment:
Q  235 ttgtgtgatactcattttaattatgattttacttcttcaggttgctgtacttttcgaaggccatg 299  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||| | |||| || ||||| ||||    
T  3886951 ttgtgtgatgctctttttaattatgattttaattcttcaggttggtttactctttgaaggtcatg 3887015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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